Name Description Institute

MTSNPSCORE

A comprehensive application for eval uation of mitochondrial DNA variations for disease association based on combined evidence approach [PM ID: 19758471]

CSIR-IGIB

CoEPrA

Feature selection and classification employing hybrid ant colony .

CSIR-NCL

CHEMSTAR

Distributed chemical computing using ChemSta r: an open source java remote method invocation architecture applied to large scale molecular data fro m PubChem.

CSIR-NCL

TRIPS

Amino acid repeat patterns in protein sequences: their diver sity and structural-functional implications.

CSIR-NCL

ARC

ARC is a flexible, automated functional classification software with Web interface for rapid analysis of genomic scale data for prokaryotes.

CSIR-IGIB

miR-BAG 

An Avant-garde parallely coded tool, based on machine learning for accurate miRNA identification. Works universely on genomic and NGS (Next Generation Sequencing) data.

CSIR-IHBT

SysBorg 2.0

A Web 3.0 system and cyberinfrastructure for collaborative research.The portal contains resources to effectively organise collaborations and tools to effectively mine and analyse the information collated by the OSDD community [http://onlinelibrary.wiley.com/doi/10.1002/9781118026038.ch20/summary].

CSIR-IGIB

p-TAREF

A concurrent application for fast and accurate plant miRNA target identifications.

CSIR-IHBT

filteR

Parallely coded tool for fast Next Generation Sequencing Read filtering and cleaning.

CSIR-IHBT

TAREF

A tool to Refine microRNAs target prediction in animal. 

CSIR-IHBT

SSIR

 SSIR (Pronounced "sir") is a Meta Search Engine, a prototype created as part of a PhD research work.

NIIST

AVPpred

AVPpred is the first antiviral peptides prediction algorithm, developed using peptides with experimentally proven antiviral activity.

CSIR-IMTECH

VIRsiRNA

VIRsiRNApred is the first antiviral siRNA prediction algorithmd, developed using new dataset of experimentally proven 1725 siRNA/shRNA having quantitative efficacies under heterogeneous experimental conditions.

CSIR-IMTECH

SPEER-SERVER

SPEER-SERVER: a web server for prediction of protein specificity determining sites.

CSIR-IICB

PALM-IST

PALM-IST: Pathway Assembly from Literature Mining-an Information Search Tool.

CSIR-IICB

Proteopedia

The remarkable efficiency of a Pin-II proteinase inhibitor sans two conserved disulfide bonds is due to enhanced flexibility and hydrogen-bond density in the reactive loop

CSIR-National

Proteopedia

Docking and molecular dynamics studies of peptide inhibitors of ornithine decarboxylase: a rate-limiting enzyme for the metabolism of Fusarium solani

CSIR-CIMAP

snoLOVD

Systematic curation and analysis of genomic variations and their potential

CSIR-IGIB

D-MATRIX

A web tool for constructing weight matrix of conserved DNA motifs.

CSIR-CIMAP


Please contact salmanusmani@imtech.res.in for any changes or suggestions.