Genomes sequence/assemble/annotate at non-CSIR organizations |
| Organism | Discription | Institute | Publication |
|---|
| Bacillus sp. Strain MCC0008 | Isolated from a consortium enriched from municipal sewage in nitrate broth (HiMedia M439) | WBUT | 23409265 |
| Paenibacillus sp. Strain ICGEB2008 (MTCC 5639) | A Gram-positive cellulolytic bacterium, isolated from the gut of Helicoverpa armigera. | ICGEB | 23405362 |
| Halophilic Bacillus sp. Strain NSP22.2 | Isolated from a Seasonal Salt Marsh of the Great Rann of Kutch, India | DGR-ICAR | 24356848 |
| Hemidesmus yellow mosaic virus | Isolate associated with yellow mosaic disease of a medicinal plant, Hemidesmus indicus, from India | Department of Virology, Sri Venkateswara University,Tirupati 517 502 Andhra Pradesh, India | 24276235 |
| Lactobacillus plantarum Strain Lp91 | A promising Indian Probiotic Isolate of Human Gut Origin | NDRI-ICMR | 24265501 |
| Sphingobium ummariense Strain RL-3 | Isolated from the HCH dumpsite located in Lucknow, India (27°00′N and 81°09′E). | ICPDP-DU | 24233594 |
| Lactobacillus fermentum Lf | Draft Genome Sequence of Lactobacillus fermentum Lf1, an Indian Isolate of Human Gut Origin | IISER, Bhopal | 24233584 |
| Bacillus sp. Strain NSP2.1 | Bacillus sp. Strain NSP2.1, a Nonhalophilic Bacterium Isolated from the Salt Marsh of the Great Rann of Kutch, India | IARI | 24158559 |
| Halophilic Bacillus sp. Strain SB49 | Extremely Halophilic Bacillus sp. Strain SB49, Isolated from a Salt Crystallizer Pond of the Little Rann of Kutch, India | ICAR | 24136852 |
| Bacillus sp. Strain NSP9.1 | Bacillus sp. Strain NSP9.1, a Moderately Halophilic Bacterium Isolated from the Salt Marsh of the Great Rann of Kutch, India | ICAR | 24115550 |
| Bacillus sp. Strain SB47 | Sequence of Bacillus sp. Strain SB47, an Obligate Extreme Halophile Isolated from a Salt Pan of the Little Rann of Kutch, India | IARI | 24115544 |
| Brucella melitensisStrain ADMAS-G1 | Isolated from Placental Fluids of an Aborted Goat | MKU | 24115541 |
| Lactobacillus fermentum Strain MTCC 8711 | Lactobacillus fermentum strain MTCC 8711 is a lactic acid bacterium isolated from yogurt. | MKU | 24072868 |
| Sphingobium lactosutens Strain DS20T | Isolated from a Hexachlorocyclohexane Dumpsite. | ICPDP-DU | 24051323 |
| Sphingobium baderi Strain LL03T | Isolated from hexachlorocyclohexane (HCH)-contaminated soil from Spolana, Czech Republic. | ICPDP-DU | 24051322 |
| Sphingobium sp. Strain HDIPO4 | Isolated from a hexachlorocyclohexane (HCH) dumpsite and degraded HCH isomers rapidly | ICPDP-DU | 24051321 |
| Postpandemic Influenza A(H1N1)pdm09 Virus | The pandemic influenza A(H1N1)pdm09 virus was first detected in India in May 2009 and continued to circulate in the postpandemic period. | NIV | 24051317 |
| Sphingobium quisquiliarum Strain P25T | A Novel Hexachlorocyclohexane (HCH)-Degrading Bacterium Isolated from an HCH Dumpsite | ICPDP-DU | 24029763 |
| Novosphingobium lindaniclasticum LE124T | Isolated from a Hexachlorocyclohexane Dumpsite | ICPDP-DU | 24029761 |
| Aeromonas sp. MDS8 Strain MCC2167 | Ammonia-Producing Aeromonas sp. MDS8 Strain MCC2167 from Sludge of a Dairy Effluent Treatment Plant | TIU | 24029759 |
| Bacillus safensis Strain VK | Isolated from Saline Desert Area of Gujarat,India. | Saurashtra University | 24009116 |
| Sphingobium chinhatense Strain IP26T | Isolated from a Hexachlorocyclohexane Dumpsite | ICPDP-DU | 23990581 |
| Rice tungro spherical virus (RTSV) | Genome of a south Indian isolate of Rice tungro spherical virus (RTSV) from Andhra Pradesh (AP) was sequenced, and the predicted amino acid sequence was analysed. | DRR | 23925555 |
| Arthrobacter crystallopoietes Strain BAB-32 | Gram-positive obligate aerobic actinobacterium having potential application in bioremediation and bioreduction of a few metals, was isolated from rhizosphere soil of Gandhinagar, Gujarat, India. | GSBM | 23833141 |
| Pseudomonas aeruginosa VRFPA02 | Isolated from a Septicemic Patient in India | VRF | 23833134 |
| Salinibacillus aidingensis Strain MSP4 | An Obligate Halophilic Bacterium Isolated from a Salt Crystallizer of the Rann of Kutch, India | IARI | 23833129 |
| Acinetobacter sp. Strain MCC2139 | This bacterium, isolated from dairy sludge and with optimum growth at 37°C, has a genome size of 2,967,280 bp with a G+C content of 42.3%. | WBUT | 23814111 |
| Agrobacterium tumefaciens str. Cherry 2E-2-2 | Isolated from Rhizosphere Soil of Crown Gall-Infected Cherry Rootstock Colt | ICPDP-DU | 23723402 |
| West Nile virus isolate 1048813 | Complete Genome Sequence of West Nile Virus Isolated from Alappuzha District, Kerala, India | NIV | 23682140 |
| Methylophaga lonarensis MPL | Methylophaga lonarensis strain MPLT is a haloalkaliphilic methylotroph isolated from Lonar Lake, a saline and alkaline lake in Maharashtra, India | NCCS | 23661481 |
| Escherichia phage ADB-2 | Complete Genome Sequence of EscherichiaPhage ADB-2 Isolated from a Fecal Sample of Poultry | AAU | 23516186 |
| Brevibacillus sp. Strain BAB-2500 | Brevibacillus sp. Strain BAB-2500, a Strain That Might Play an Important Role in Agriculture | GSBM | 23472223 |
| Bacillus sp., WBUNB009 | Isolated from a raw sewage canal in nitrate broth (Himedia M439) with a G+C content of 34.9% is reported. | WBUT | 23469363 |
| Bacillus sp., WBUNB004 | Isolated from rhizosphere of a water lily, with a genome size of 5,465,157 bp and a G+C content of 35.0%, is reported. | WBUT | 23469361 |
| Pseudomonas putida CSV86 | A soil isolate, preferentially utilizes naphthalene over glucose as a source of carbon and energy | IIT-B | 23469351 |
| Halobacillus sp. Strain BAB-2008 | Isolated from saline soil near Zazam-Solar Park Road, Gujarat, India | GSBM | 23469348 |
| Chickpea (Cicer arietinum) | Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. | ICRISAT | 23354103 |
| Salmonella enterica serovar Typhi strain CR0063 | Salmonella Typhi isolate representing an asymptomatic carrier individual during a prolonged outbreak of typhoid fever in Kelantan, Malaysia. | UH | 23234298 |
| Janibacter hoylei MTCC8307 | Genome sequencing of MTCC8307 was carried out for the better understanding of how biological processes and bacterial life can be sustained at high altitude. | NCCS | 23144385 |
| Staphylococcus arlettae strain CVD059 | Isolated from the blood of a rheumatic mitral stenosis patient. | MKU | 23144377 |
| Pontibacter sp. nov. BAB1700 | A halotolerant, Gram-negative, rod-shaped, pink-pigmented, menaquinone-7-producing bacterium isolated from sediments of a drilling well; having vital gene clusters involved in vitamin biosynthesis and resistance against various metals and antibiotics. | GSBM | 23105068 |
| Pseudomonas putida S11 | Whole-genome shotgun sequencing of P. puti S11 was done to further understand genes essential for root colonization and survival in the rhizosphere. | MKU | 23045515 |
| Helicobacter pylori NAB47 | Genome wiil be helpful in solving the so-called Indian enigma, by which high infection rates do not corroborate the minuscule number of serious outcomes observed, including gastric cancer | UH | 23045484 |
| Helicobacter pylori NAD1 | Genome wiil be helpful in solving the so-called Indian enigma, by which high infection rates do not corroborate the minuscule number of serious outcomes observed, including gastric cancer | UH | 23045485 |
| Acinetobacter sp. strain HA | Acinetobacter sp. strain HA was isolated from the midgut of a fifth-instar larva of Helicoverpa armigera collected from an agricultural field in Maharashtra, India | DU | 22933775 |
| Mycobacterium avium subsp. paratuberculosis S5 | Isolated from a terminally sick goat of Jamunapari farm at Central Institute for Research on Goats, India. Draft genome of this strain will be helpful in studying novelties of this new genotype, which is highly pathogenic and adapted to a wide varieties of animals. | ICAR-CIRG | |
| Salmonella enterica Serovar Typhi str. UJ308A | Genomics of these and other isolates would enable us to identify genetic rearrangements and mechanisms responsible for endemicity and the differential severity of pathogenic salmonellae in Papua New Guinea and elsewhere. | UH | 22933755 |
| Salmonella enteric Serovar Typhi str. UJ816A | Genomics of these and other isolates would enable us to identify genetic rearrangements and mechanisms responsible for endemicity and the differential severity of pathogenic salmonellae in Papua New Guinea and elsewhere. | UH | 22933756 |
| Alkalibacillus haloalkaliphilus C-5 | The organism is capable of alkaline protease production under conditions of pH 10 and 10% (wt/vol) salt. | SU | 22887673 |
| Pseudaminobacter salicylatoxidans KCT001 | Analysis of its genome offers valuable insight into the adaptive specializations and evolution of free-living soil bacteria that are phylogenetically closely related to symbiotic and invasive rhizobacteria. | BI | 22887656 |
| Enterobacter cloacae GS1 | This strain proficiently colonizes rice roots and promotes plant growth by improving plant nutrition. | MKU | 22843603 |
| Sphingobium indicum B90A | Isolated in 1990 from sugarcane rhizosphere soil in Cuttack, India; now become a model system for understanding the genetics, biochemistry, and physiology of HCH degradation. | DU | 22843598 |
| Mycobacterium tuberculosis RGTB327 | Isolated from Kerala, a state in south India. These strains were part of a repository of field strains that had been made as a part of a drug screening program of the laboratory | RGCB | 22843573 |
| Mycobacterium tuberculosis RGTB423 | Isolated from Kerala, a state in south India. These strains were part of a repository of field strains that had been made as a part of a drug screening program of the laboratory | RGCB | 22843573 |
| Staphylococcus aureus 118 (ST772) | ST772, called the Bengal Bay clone by some, was previously reported only in Bangladesh, India, and Malaysia but is now being reported in England, Ireland, and several other European countries. | IISC | 22740659 |
| Thermus sp. strain RL | Isolated from a hot water spring at Manikaran, India; produce thermostable enzymes. | DU | 22689228 |
| Lactobacillus rhamnosus MTCC 5462 | The strain exhibited an ability to reduce cholesterol and stimulate immunity. The strain has exhibited positive results in alleviating gastrointestinal discomfort and good potential as a probiotic. | AAU | 22328760 |
| Pigeonpea (Cajanus cajan) | Pigeonpea is an important legume food crop grown primarily by smallholder farmers in many semi-arid tropical regions of the world. | ICRISAT | 22057054 |
| Pasteurella multocida subsp. gallicida Anand1_poultry | Isolated from the liver of a diseased adult female chicken. The strain causes a disease called "fowl cholera," which is a contagious disease in birds. | AAU | 21914901 |
| Paracoccus denitrificans | The isolate was capable of utilizing N,N-dimethylformamide (DMF) as a source of carbon and nitrogen and therefore holds potential for bioremediation and mineralization of industrial pollutants. | UH | 21914898 |
| Amycolatopsis mediterranei S699 | An actinomycete that produces an important antibiotic, rifamycin B. Semisynthetic derivatives of rifamycin B are used for the treatment of tuberculosis, leprosy, and AIDS-related mycobacterial infections. | DU | 21914879 |
| Tetrathiobacter kashmirensis | A complete inorganic sulfur oxidation gene cluster, soxCDYZAXWB, is present in its genome, pathogenicity islands or genes associated with virulence, disease, cellular invasion, and or intracellular resistance are completely absent. | BI | 21914874 |
| Lactobacillus helveticus strain, MTCC 5463 | The strain exhibited potential probiotic properties, with their beneficial role in the gastrointestinal tract and their ability to reduce cholesterol and stimulate immunity. | AAU | 21705605 |
| Escherichia coli strain NA114 | E. coli strain NA114 isolated from India, a UPEC strain with a multidrug resistance phenotype and the capacity to produce extended-spectrum beta-lactamase. | UH | 21685291 |
| Rubrivivax benzoatilyticus strain JA2T | First genome sequence report of a phototrophic member belonging to the class Betaproteobacteria. The unique feature of this strain is its capability to synthesize carotenoids through both spirilloxanthin and spheroidenone pathways. | UH | 21478355 |
| Helicobacter pylori strain 908 | Isolated from an African patient living in France who suffered with recrudescent duodenal ulcer disease. | UH | 20952566 |
| Virus mesogenic vaccine strain R2B | In India, the mesogenic strain R2B was introduced in 1945; it protects adult chickens that have been preimmunized with a lentogenic vaccine virus and provides long-lasting immunity. | IVRI | 23166233 |
| Indian citrus ringspot virus(ICRSV) | An isolate of Mandarivirus infecting the sweet orange [Citrus sinensis (L) Blanco] in the western part of India (Pune) was done. | IARI | 23087111 |
| Bluetongue virus serotype 16 | The virus was isolated from an in-contact goat from an animal farm in Chennai where clinical disease occurs in sheep. | LLR | 22787269 |
| Bluetongue virus serotype 9 | The sequence analysis points to continued circulation in India of a mixed topotype virus apparently belonging to the BTV-9 serotype. | ELLA F. | 22787266 |
| Citrus tristeza virus isolate Kpg 3 | CTV isolate, Kpg3, of the Darjeeling hills of the Northeastern Himalayan region of India is reported for the first time. | IARI | 22160128 |
| Clerodendron yellow mosaic virus | Clerodendron inerme, a common hedge plant grown in India, is affected by a yellow mosaic disease caused by a begomovirus. | IARI | 22149502 |
| Banana bract mosaic virus (BBrMV) | Banana bract mosaic virus (BBrMV), a member of the genus Potyvirus, familyPotyviridae, is the causal agent of bract mosaic disease. | ICAR-NRCB | 22134527 |
| Papaya ringspot virus | Complete genome sequence of an isolate of PRSV (designated as PRSV-DEL) from India and its comparison with other isolates. | IARI | 17180625 |
| Indian swine hepatitis E virus isolate of genotype 4 | Isolated from feces of a pig experimentally infected with swine HEV pool from western India. | NIV | 16457969 |
| Dengue virus serotype 1 (DENV-1) | Isolates from a localized, small-scale, non-seasonal dengue outbreak were genetically characterized. The outbreak occurred during the pre-monsoon months (April–May) in a medical college campus in Kerala, South India in 2009 affecting 76 people. | RGCB | 22729802 |
| Dengue virus 3 strain GWL-25 | Genome of three dengue type 3 viruses isolated from India. | DRDE | 21411675 |
| Dengue virus 3 isolate ND143 | Genome of three dengue type 3 viruses isolated from India. | DRDE | 21411675 |
| Dengue virus 3 isolate DEL-72 | Genome of three dengue type 3 viruses isolated from India. | DRDE | 21411675 |
| Hepatitis C virus subtype 3i | The information on complete genomic sequences of the genotype 3 HCV isolates should be helpful in future studies on HCV evolution and classification, and for development of newer therapeutic and preventive strategies against this infection. | NIV | 20658329 |
| Hepatitis C virus subtype 3a | The information on complete genomic sequences of the genotype 3 HCV isolates should be helpful in future studies on HCV evolution and classification, and for development of newer therapeutic and preventive strategies against this infection. | NIV | 20658329 |
| Chikungunya virus strain RGCB03/KL06 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Chikungunya virus strain RGCB05/KL06 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Chikungunya virus strain RGCB80/KL07 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Chikungunya virus strain RGCB120/KL07 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Chikungunya virus strain RGCB355/KL08 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Chikungunya virus strain RGCB356/KL08 | Six CHIKV isolates (2006 RGCB03, RGCB05; 2007 RGCB80, RGCB120; 2008 RGCB355, RGCB356) from three consecutive Chikungunya outbreaks in Kerala, South India, were analyzed for genetic variations by sequencing the 11798 bp whole genome of the virus. | RGCB | 19851853 |
| Citrus yellow mosaic badna virus (CMBV), AL | In order to obtain a better understanding of the genetic variability of the virus in other citrus mosaic-affected citrus species have been done. | DU | 19444599 |
| Citrus yellow mosaic badna virus (CMBV), PM | In order to obtain a better understanding of the genetic variability of the virus in other citrus mosaic-affected citrus species have been done. | DU | 19444599 |
| Cicer arietinum L. | Cicer arietinum L. (chickpea) is the third most important food legume crop. | NIPGR | 23489434 |
| Influenza C virus | The outcome of the whole genome analysis of the strain C/Eastern-India/1202/2011 provided useful information regarding genetic diversity of influenza C strains in India. | NICED | 23523822 |
| Micrococcus luteus Strain Modasa | The hydrocarbon-degrading bacterium Micrococcus luteus strain Modasa was isolated from contaminated soil from Modasa, North Gujarat, India | Xcelris | 23516205 |
| Streptococcus thermophilus MTCC 5461 | whole genome of Streptococcus thermophilus MTCC 5461, the strain isolated from a curd source, by 454 GS-FLX titanium and Ion Torrent PGM. | AAU | 23568199 |
| Leishmania donovani from India | Leishmania, a trypanosomatid protozoan parasite of humans, causes a wide spectrum of clinical disease referred to as leishmaniasis. | CSIR-CDRI | 23418454 |
| Japanese encephalitis virus | The complete genome of the Japanese encephalitis virus (JEV) strain JEV/eq/India/H225/2009(H225), isolated from an infected horse in India, was sequenced and compared to previously published JEV genomes. | NRCE | 23001697 |
| South Asian-Indian personal genome | Sequencing and analysis of a South Asian-Indian personal genome. | SCIGenome | 22938532 |
| Rice | International Rice Genome Sequencing Project | SCIGenome | 10712951 |