Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_055826 16 5631 NP_001185879 16 5631 NP_149037 16 5631 NP_001171700 16 5631 NP_054733 16 7355 NP_001034864 15 9605 XP_005245975 15 9605>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 AA VSQIQL Sbjct: 2553 AALVSQIQL 2561>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 AA VSQIQL Sbjct: 2545 AALVSQIQL 2553>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 AA VSQIQL Sbjct: 2506 AALVSQIQL 2514>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 AA VSQIQL Sbjct: 2585 AALVSQIQL 2593>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 AA VSQIQL Sbjct: 2598 AALVSQIQL 2606>NP_055826 Length = 1858 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 +AFVS +QL Sbjct: 685 SAFVSDLQL 693>NP_001185879 Length = 1880 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 AAFVSQIQL 9 +AFVS +QL Sbjct: 707 SAFVSDLQL 715>NP_149037 Length = 301 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FVSQIQL 9 FVSQIQ+ Sbjct: 238 FVSQIQI 244>NP_001171700 Length = 301 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FVSQIQL 9 FVSQIQ+ Sbjct: 238 FVSQIQI 244>NP_054733 Length = 2136 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AFVSQIQL 9 AF+SQ++L Sbjct: 1065 AFISQLKL 1072>NP_001034864 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FVSQIQL 9 FVS+IQL Sbjct: 1354 FVSKIQL 1360>XP_005245975 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FVSQIQL 9 FVS+IQL Sbjct: 1354 FVSKIQL 1360Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.133 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 270,414 Number of extensions: 229 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |