Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1482 NP_001075109 18 1482 NP_055178 17 2528 NP_001264984 17 2528 XP_005266395 17 2528 NP_001129246 17 4312 NP_003481 17 4312 NP_598344 17 4312 NP_803875 17 4312 NP_071410 16 7355 NP_001186562 16 7355 NP_002630 16 7355 NP_001017403 16 7355 NP_996920 16 7355 NP_067649 16 7355 NP_001017404 16 7355 NP_996919 16 7355 NP_001026 16 7355 NP_065140 16 7355 NP_001243325 16 7355 NP_001243324 16 7355 NP_112592 16 7355 XP_005254670 16 7355 XP_006720721 16 7355 XP_005269228 16 7355 XP_006711873 16 7355 XP_006711872 16 7355 XP_006711871 16 7355 XP_006711870 16 7355 XP_006711869 16 7355 XP_006711868 16 7355 XP_006711867 16 7355 XP_006711866 16 7355 XP_006711865 16 7355 XP_006711543 16 7355 XP_005245461 16 7355 NP_001264156 15 9605 NP_003658 15 9605 NP_001264155 15 9605 NP_004843 15 9605 NP_079007 15 9605 NP_057179 15 9605 NP_055214 15 9605 XP_005256206 15 9605 XP_005269261 15 9605 NP_115536 15 9605>NP_008835 Length = 4128 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALNSLYS K Sbjct: 2541 ALNSLYSPK 2549>NP_001075109 Length = 4097 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALNSLYS K Sbjct: 2541 ALNSLYSPK 2549>NP_055178 Length = 4579 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALN LYS+K Sbjct: 2758 ALNVLYSVK 2766>NP_001264984 Length = 4432 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALN LYS+K Sbjct: 2611 ALNVLYSVK 2619>XP_005266395 Length = 4588 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALN LYS+K Sbjct: 2767 ALNVLYSVK 2775>NP_001129246 Length = 579 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ALNSLYSL 8 A+NSLYS+ Sbjct: 190 AVNSLYSV 197>NP_003481 Length = 580 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ALNSLYSL 8 A+NSLYS+ Sbjct: 191 AVNSLYSV 198>NP_598344 Length = 444 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ALNSLYSL 8 A+NSLYS+ Sbjct: 191 AVNSLYSV 198>NP_803875 Length = 4243 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ALNSLYSLK 9 ALN L+S+K Sbjct: 571 ALNDLWSIK 579>NP_071410 Length = 691 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 +SLYSLK Sbjct: 665 HSLYSLK 671>NP_001186562 Length = 691 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 +SLYSLK Sbjct: 665 HSLYSLK 671>NP_002630 Length = 375 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNSLYSLK 9 L+S YSLK Sbjct: 80 LSSFYSLK 87>NP_001017403 Length = 967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 A + LYSLK Sbjct: 109 AFSGLYSLK 117>NP_996920 Length = 706 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 NSL+SLK Sbjct: 391 NSLHSLK 397>NP_067649 Length = 915 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 A + LYSLK Sbjct: 57 AFSGLYSLK 65>NP_001017404 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 A + LYSLK Sbjct: 66 AFSGLYSLK 74>NP_996919 Length = 706 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 NSL+SLK Sbjct: 391 NSLHSLK 397>NP_001026 Length = 4967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>NP_065140 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALNSLYSL 8 ALN+ YSL Sbjct: 251 ALNTYYSL 258>NP_001243325 Length = 428 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALNSLYSL 8 ALN+ YSL Sbjct: 221 ALNTYYSL 228>NP_001243324 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALNSLYSL 8 ALN+ YSL Sbjct: 182 ALNTYYSL 189>NP_112592 Length = 349 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALNSLYS 7 A+NS+YS Sbjct: 68 AINSIYS 74>XP_005254670 Length = 648 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 NSL+SLK Sbjct: 333 NSLHSLK 339>XP_006720721 Length = 705 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 NSLYSLK 9 NSL+SLK Sbjct: 391 NSLHSLK 397>XP_005269228 Length = 349 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALNSLYS 7 A+NS+YS Sbjct: 68 AINSIYS 74>XP_006711873 Length = 4954 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711872 Length = 2735 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711871 Length = 4906 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711870 Length = 4965 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711869 Length = 4973 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711868 Length = 4975 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711867 Length = 4977 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711866 Length = 4984 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711865 Length = 4985 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 LNSLYSL 8 LNSLY L Sbjct: 530 LNSLYEL 536>XP_006711543 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 A + LYSLK Sbjct: 109 AFSGLYSLK 117>XP_005245461 Length = 924 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 A + LYSLK Sbjct: 66 AFSGLYSLK 74>NP_001264156 Length = 835 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ALNSLYSLK 9 A LYSLK Sbjct: 109 AFTGLYSLK 117>NP_003658 Length = 907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ALNSLYSLK 9 A LYSLK Sbjct: 109 AFTGLYSLK 117>NP_001264155 Length = 883 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ALNSLYSLK 9 A LYSLK Sbjct: 109 AFTGLYSLK 117>NP_004843 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ALNSLYS 7 A+N+LYS Sbjct: 206 AMNNLYS 212>NP_079007 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNSLYSLK 9 L S+YSLK Sbjct: 154 LASIYSLK 161>NP_057179 Length = 185 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ALNSLYSLK 9 ALN +Y L+ Sbjct: 163 ALNHMYKLR 171>NP_055214 Length = 204 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ALNSLYSL 8 ALN LY+L Sbjct: 15 ALNLLYTL 22>XP_005256206 Length = 616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LNSLYSLK 9 L S+YSLK Sbjct: 154 LASIYSLK 161>XP_005269261 Length = 833 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ALNSLYSLK 9 A LYSLK Sbjct: 35 AFTGLYSLK 43>NP_115536 Length = 1222 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SLYSLK 9 SLYSLK Sbjct: 1057 SLYSLK 1062Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.124 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 446,099 Number of extensions: 646 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |