Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 18 1135 NP_066124 18 1135 XP_006717999 18 1135 NP_997698 17 4312 NP_001597 17 4312 XP_006717059 17 4312 XP_005273301 16 7355 NP_003263 16 7355 NP_277040 16 7355 NP_079441 15 9605 NP_001004334 15 9605 NP_001186948 15 9605 NP_001010986 15 9605 NP_775965 15 9605 NP_872588 15 9605 NP_000904 15 9605 XP_006724816 15 9605 XP_006724815 15 9605 XP_006724814 15 9605 XP_005262462 15 9605 XP_006723863 15 9605 XP_005260263 15 9605 XP_006723862 15 9605 NP_001123475 15 9605 NP_653243 15 9605>NP_065681 Length = 1072 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 A VLFSFIV Sbjct: 640 AAVLFSFIV 648>NP_066124 Length = 1114 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 A VLFSFIV Sbjct: 640 AAVLFSFIV 648>XP_006717999 Length = 1207 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 A VLFSFIV Sbjct: 733 AAVLFSFIV 741>NP_997698 Length = 2466 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 AT++F F+V Sbjct: 826 ATIMFCFLV 834>NP_001597 Length = 2436 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 AT++F F+V Sbjct: 796 ATIMFCFLV 804>XP_006717059 Length = 2435 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ATVLFSFIV 9 AT++F F+V Sbjct: 795 ATIMFCFLV 803>XP_005273301 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TVLFSF 7 TVLFSF Sbjct: 93 TVLFSF 98>NP_003263 Length = 399 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TVLFSF 7 TVLFSF Sbjct: 93 TVLFSF 98>NP_277040 Length = 397 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLFSFI+ Sbjct: 163 VLFSFIL 169>NP_079441 Length = 397 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 68 LFSFIV 73>NP_001004334 Length = 2367 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TVLFSFIV 9 TVLF F++ Sbjct: 421 TVLFGFLL 428>NP_001186948 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 221 LFSFIV 226>NP_001010986 Length = 1119 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 352 VLFNFII 358>NP_775965 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 352 VLFNFII 358>NP_872588 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 221 LFSFIV 226>NP_000904 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 221 LFSFIV 226>XP_006724816 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 349 VLFNFII 355>XP_006724815 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 349 VLFNFII 355>XP_006724814 Length = 1116 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 349 VLFNFII 355>XP_005262462 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLFSFIV 9 VLF+FI+ Sbjct: 349 VLFNFII 355>XP_006723863 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 140 LFSFIV 145>XP_005260263 Length = 365 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 216 LFSFIV 221>XP_006723862 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LFSFIV 9 LFSFIV Sbjct: 221 LFSFIV 226>NP_001123475 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TVLFSFI 8 TV+FSF+ Sbjct: 141 TVVFSFL 147>NP_653243 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TVLFSFI 8 TV+FSF+ Sbjct: 121 TVVFSFL 127Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.352 0.153 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 329,031 Number of extensions: 522 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |