Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1482 NP_001075109 18 1482 NP_003909 16 7355 NP_001171632 16 7355 NP_060474 16 7355 XP_006724585 16 7355 XP_006724584 16 7355 XP_005274676 16 7355 XP_005274674 16 7355 XP_005274675 16 7355 XP_005247626 16 7355 XP_005247625 16 7355 NP_001093226 15 9605 NP_001093225 15 9605 NP_001093223 15 9605 NP_001093224 15 9605 NP_001093222 15 9605 NP_001093221 15 9605 NP_001093220 15 9605 NP_001093219 15 9605 NP_001093217 15 9605 NP_001093216 15 9605 NP_001093215 15 9605 NP_001093214 15 9605 NP_001093213 15 9605 NP_443111 15 9605 NP_060256 15 9605 NP_954660 15 9605 NP_954658 15 9605 NP_001164274 15 9605 XP_006719279 15 9605 XP_005268670 15 9605 XP_006719278 15 9605 XP_005251057 15 9605 XP_005251056 15 9605 XP_006716664 15 9605 XP_006716663 15 9605 NP_001164275 15 9605 NP_001164279 15 9605 NP_001093218 15 9605>NP_008835 Length = 4128 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVLELMRSS 9 AVLELM+SS Sbjct: 1578 AVLELMQSS 1586>NP_001075109 Length = 4097 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 AVLELMRSS 9 AVLELM+SS Sbjct: 1578 AVLELMQSS 1586>NP_003909 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>NP_001171632 Length = 430 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>NP_060474 Length = 275 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LEL+RSS Sbjct: 178 LLELLRSS 185>XP_006724585 Length = 499 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 10 AGLELLRSS 18>XP_006724584 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>XP_005274676 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>XP_005274674 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>XP_005274675 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 AVLELMRSS 9 A LEL+RSS Sbjct: 12 AGLELLRSS 20>XP_005247626 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LEL+RSS Sbjct: 194 LLELLRSS 201>XP_005247625 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LEL+RSS Sbjct: 194 LLELLRSS 201>NP_001093226 Length = 660 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 337 VIETMRSS 344>NP_001093225 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 221 VIETMRSS 228>NP_001093223 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 339 VIETMRSS 346>NP_001093224 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347>NP_001093222 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347>NP_001093221 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 339 VIETMRSS 346>NP_001093220 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347>NP_001093219 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 221 VIETMRSS 228>NP_001093217 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 339 VIETMRSS 346>NP_001093216 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 221 VIETMRSS 228>NP_001093215 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347>NP_001093214 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347>NP_001093213 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 339 VIETMRSS 346>NP_443111 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>NP_060256 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 339 VIETMRSS 346>NP_954660 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>NP_954658 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 172 ILEVLRSS 179>NP_001164274 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>XP_006719279 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>XP_005268670 Length = 654 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 103 ILEVLRSS 110>XP_006719278 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>XP_005251057 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 177 VIETMRSS 184>XP_005251056 Length = 533 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 210 VIETMRSS 217>XP_006716664 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 299 VIETMRSS 306>XP_006716663 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 446 VIETMRSS 453>NP_001164275 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>NP_001164279 Length = 653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VLELMRSS 9 +LE++RSS Sbjct: 173 ILEVLRSS 180>NP_001093218 Length = 663 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VLELMRSS 9 V+E MRSS Sbjct: 340 VIETMRSS 347Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.123 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 308,175 Number of extensions: 346 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |