Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_443179 20 390 NP_004765 18 1482 NP_001014364 18 1482 XP_005257522 18 1482 NP_005322 17 4312 NP_004963 16 5631 NP_037425 16 5631 NP_073752 16 5631 XP_006720709 16 5631 XP_005254660 16 5631 XP_005251512 16 5631 NP_000549 15 9605 NP_001137411 15 9605 NP_001137410 15 9605 NP_000508 15 9605 NP_694945 15 9605 NP_001257293 15 9605 NP_003704 15 9605 NP_001229338 15 9605 NP_036322 15 9605 NP_001257294 15 9605 NP_001229761 15 9605 NP_689502 15 9605 NP_115765 15 9605 NP_001399 15 9605 NP_001254824 15 9605 NP_073588 15 9605 NP_597712 15 9605 XP_005261390 15 9605 XP_006724197 15 9605 XP_006724196 15 9605 XP_005261387 15 9605 XP_005261386 15 9605 XP_006724195 15 9605 XP_005261385 15 9605 XP_006723002 15 9605 XP_005260208 15 9605 XP_005260207 15 9605 XP_006723001 15 9605 XP_006721233 15 9605 XP_005271730 15 9605 XP_005253225 15 9605 XP_006718409 15 9605 XP_005253224 15 9605 XP_005253223 15 9605 XP_006713545 15 9605 XP_006713544 15 9605 XP_006710468 15 9605 XP_005270637 15 9605 NP_114171 15 9605>NP_443179 Length = 2170 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSRVSKHG 9 SSRVSKHG Sbjct: 414 SSRVSKHG 421>NP_004765 Length = 1581 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GSS ++KHG Sbjct: 1154 GSSPITKHG 1162>NP_001014364 Length = 2391 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GSS+V KHG Sbjct: 2339 GSSQVWKHG 2347>XP_005257522 Length = 1409 Score = 18.1 bits (35), Expect = 1482 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GSS ++KHG Sbjct: 982 GSSPITKHG 990>NP_005322 Length = 142 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GSS+V HG Sbjct: 52 GSSQVRAHG 60>NP_004963 Length = 1132 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GS+R +HG Sbjct: 127 GSNRAYRHG 135>NP_037425 Length = 282 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SRVSKH 8 SRVSKH Sbjct: 40 SRVSKH 45>NP_073752 Length = 1460 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 G+S VS HG Sbjct: 1073 GNSSVSGHG 1081>XP_006720709 Length = 1189 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 G+S VS HG Sbjct: 802 GNSSVSGHG 810>XP_005254660 Length = 1460 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 G+S VS HG Sbjct: 1073 GNSSVSGHG 1081>XP_005251512 Length = 1132 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GS+R +HG Sbjct: 127 GSNRAYRHG 135>NP_000549 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GS++V HG Sbjct: 52 GSAQVKGHG 60>NP_001137411 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GSSRVSKH 8 G+SR+++H Sbjct: 406 GNSRLARH 413>NP_001137410 Length = 661 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GSSRVSKH 8 G+SR+++H Sbjct: 393 GNSRLARH 400>NP_000508 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GS++V HG Sbjct: 52 GSAQVKGHG 60>NP_694945 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GS+RVS G Sbjct: 182 GSTRVSLEG 190>NP_001257293 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 GS+ V KH Sbjct: 660 GSTEVGKH 667>NP_003704 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 G SRVS H Sbjct: 242 GLSRVSDH 249>NP_001229338 Length = 876 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 G+S V+ HG Sbjct: 397 GNSEVNLHG 405>NP_036322 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 GS+ V KH Sbjct: 650 GSTEVGKH 657>NP_001257294 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 GS+ V KH Sbjct: 549 GSTEVGKH 556>NP_001229761 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>NP_689502 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSRVSKH 8 SSR+S+H Sbjct: 461 SSRLSRH 467>NP_115765 Length = 521 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>NP_001399 Length = 2923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GSS V+ HG Sbjct: 1621 GSSLVAWHG 1629>NP_001254824 Length = 441 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 267 ARISQHG 273>NP_073588 Length = 875 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 G+S V+ HG Sbjct: 397 GNSEVNLHG 405>NP_597712 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 269 ARISQHG 275>XP_005261390 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 150 ARISQHG 156>XP_006724197 Length = 329 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 153 ARISQHG 159>XP_006724196 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 185 ARISQHG 191>XP_005261387 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 269 ARISQHG 275>XP_005261386 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 241 ARISQHG 247>XP_006724195 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 269 ARISQHG 275>XP_005261385 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 SRVSKHG 9 +R+S+HG Sbjct: 269 ARISQHG 275>XP_006723002 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSRVSKH 8 SSR+S+H Sbjct: 240 SSRLSRH 246>XP_005260208 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSRVSKH 8 SSR+S+H Sbjct: 354 SSRLSRH 360>XP_005260207 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSRVSKH 8 SSR+S+H Sbjct: 461 SSRLSRH 467>XP_006723001 Length = 492 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 SSRVSKH 8 SSR+S+H Sbjct: 467 SSRLSRH 473>XP_006721233 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 SRVSKHG 9 SR+ +HG Sbjct: 328 SRIGRHG 334>XP_005271730 Length = 648 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SRVSKHG 9 SRV +HG Sbjct: 266 SRVKEHG 272>XP_005253225 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>XP_006718409 Length = 546 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>XP_005253224 Length = 549 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>XP_005253223 Length = 560 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSSRVSKHG 9 GS+ +++HG Sbjct: 122 GSAALARHG 130>XP_006713545 Length = 900 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 GS+ V KH Sbjct: 648 GSTEVGKH 655>XP_006713544 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GSSRVSKH 8 GS+ V KH Sbjct: 650 GSTEVGKH 657>XP_006710468 Length = 2916 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GSS V+ HG Sbjct: 1621 GSSLVAWHG 1629>XP_005270637 Length = 2921 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSSRVSKHG 9 GSS V+ HG Sbjct: 1621 GSSLVAWHG 1629>NP_114171 Length = 798 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SSRVSKH 8 SSR SKH Sbjct: 336 SSRKSKH 342Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.119 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 475,620 Number of extensions: 872 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |