Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_079535 17 2528 NP_751898 17 2528 NP_002432 17 2528 NP_751897 17 2528 NP_722576 17 2528 XP_005262424 17 2528 NP_001020365 17 3301 NP_001257 17 3301 NP_001020366 17 3301 XP_005276924 17 3301 XP_005255831 17 3301 NP_003961 16 7355 NP_005493 16 7355 NP_036223 16 7355 NP_115486 16 7355 NP_006415 16 7355 NP_002066 16 7355 NP_001171470 16 7355 NP_001171469 16 7355 XP_005253737 16 7355 XP_005251837 16 7355 XP_005251835 16 7355 XP_006717058 16 7355 XP_005251833 16 7355 XP_005251831 16 7355 XP_005251830 16 7355 XP_006716300 16 7355 XP_006712030 16 7355 NP_036458 16 7355 NP_079511 15 9605 NP_835464 15 9605 NP_055055 15 9605 NP_036237 15 9605 NP_620477 15 9605 NP_620476 15 9605 XP_005270242 15 9605 XP_005270208 15 9605 XP_005270207 15 9605 XP_005270206 15 9605 NP_077302 15 9605>NP_079535 Length = 822 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 TVDGLAL 8 TVDGLAL Sbjct: 697 TVDGLAL 703>NP_751898 Length = 834 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 TVDGLAL 8 TVDGLAL Sbjct: 679 TVDGLAL 685>NP_002432 Length = 834 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 TVDGLAL 8 TVDGLAL Sbjct: 679 TVDGLAL 685>NP_751897 Length = 835 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 TVDGLAL 8 TVDGLAL Sbjct: 680 TVDGLAL 686>NP_722576 Length = 3080 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 LTV GLALA Sbjct: 2559 LTVAGLALA 2567>XP_005262424 Length = 2875 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 LTV GLALA Sbjct: 2354 LTVAGLALA 2362>NP_001020365 Length = 567 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T DGLALA Sbjct: 151 TYDGLALA 158>NP_001257 Length = 566 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T DGLALA Sbjct: 151 TYDGLALA 158>NP_001020366 Length = 568 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T DGLALA Sbjct: 152 TYDGLALA 159>XP_005276924 Length = 567 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T DGLALA Sbjct: 152 TYDGLALA 159>XP_005255831 Length = 567 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T DGLALA Sbjct: 152 TYDGLALA 159>NP_003961 Length = 1465 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVDGL 6 LTVDGL Sbjct: 770 LTVDGL 775>NP_005493 Length = 2261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>NP_036223 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LTVDGLA 7 LTV+GLA Sbjct: 235 LTVEGLA 241>NP_115486 Length = 542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TVDGLALA 9 T +GLALA Sbjct: 135 TAEGLALA 142>NP_006415 Length = 690 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 LTV GL+LA Sbjct: 542 LTVFGLSLA 550>NP_002066 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 +T DG+A+A Sbjct: 320 VTADGMAVA 328>NP_001171470 Length = 689 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 LTV GL+LA Sbjct: 541 LTVFGLSLA 549>NP_001171469 Length = 689 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 LTV GL+LA Sbjct: 541 LTVFGLSLA 549>XP_005253737 Length = 339 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTVDGLALA 9 +T DG+A+A Sbjct: 319 VTADGMAVA 327>XP_005251837 Length = 1659 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>XP_005251835 Length = 2074 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>XP_006717058 Length = 2100 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>XP_005251833 Length = 2203 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 854 VAVDGLAL 861>XP_005251831 Length = 2263 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>XP_005251830 Length = 2263 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVDGLAL 8 + VDGLAL Sbjct: 914 VAVDGLAL 921>XP_006716300 Length = 1445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVDGL 6 LTVDGL Sbjct: 770 LTVDGL 775>XP_006712030 Length = 266 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVDGL 6 LTVDGL Sbjct: 199 LTVDGL 204>NP_036458 Length = 281 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVDGL 6 LTVDGL Sbjct: 214 LTVDGL 219>NP_079511 Length = 1166 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TVDGLALA 9 +V+GLALA Sbjct: 1130 SVNGLALA 1137>NP_835464 Length = 692 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LTVDGLALA 9 LTV G ALA Sbjct: 510 LTVPGQALA 518>NP_055055 Length = 676 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTVDGLA 7 LTVDG A Sbjct: 97 LTVDGAA 103>NP_036237 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 DGLALA 9 DGLALA Sbjct: 58 DGLALA 63>NP_620477 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 DGLALA 9 DGLALA Sbjct: 58 DGLALA 63>NP_620476 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 DGLALA 9 DGLALA Sbjct: 58 DGLALA 63>XP_005270242 Length = 734 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TVDGLALA 9 +V+GLALA Sbjct: 698 SVNGLALA 705>XP_005270208 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDGLAL 8 VDGLAL Sbjct: 153 VDGLAL 158>XP_005270207 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDGLAL 8 VDGLAL Sbjct: 153 VDGLAL 158>XP_005270206 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDGLAL 8 VDGLAL Sbjct: 240 VDGLAL 245>NP_077302 Length = 300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDGLAL 8 VDGLAL Sbjct: 153 VDGLAL 158Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.141 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 394,238 Number of extensions: 387 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |