Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_002515                                                              20     390
NP_848599                                                              17    2528
NP_671766                                                              17    2528
NP_671756                                                              17    2528
NP_003734                                                              17    2528
XP_006713081                                                           17    2528
XP_006712189                                                           17    2528
XP_005264685                                                           17    2528
XP_005264684                                                           17    2528
XP_005264683                                                           17    2528
XP_005264682                                                           17    2528
NP_789765                                                              17    3301
NP_001123914                                                           17    3301
NP_005334                                                              17    3301
NP_004976                                                              17    3301
NP_203524                                                              17    3301
XP_006725199                                                           17    3301
XP_006719132                                                           17    3301
XP_006718280                                                           17    3301
XP_005248250                                                           17    3301
NP_444270                                                              17    3301
NP_001180360                                                           17    4312
NP_057051                                                              17    4312
NP_036543                                                              17    4312
XP_005270795                                                           17    4312
NP_000713                                                              16    5631
NP_057215                                                              16    5631
NP_001248315                                                           16    5631
NP_001248311                                                           16    5631
NP_001248313                                                           16    5631
NP_001128563                                                           16    5631
NP_001035787                                                           16    5631
NP_060784                                                              16    5631
NP_001128564                                                           16    5631
NP_001248312                                                           16    5631
NP_663625                                                              16    5631
NP_001248314                                                           16    5631
XP_005253058                                                           16    5631
XP_005252857                                                           16    5631
XP_006718211                                                           16    5631
XP_006716184                                                           16    5631
XP_006716183                                                           16    5631
XP_005250631                                                           16    5631
XP_005250630                                                           16    5631
XP_006716182                                                           16    5631
XP_005250629                                                           16    5631
XP_005250627                                                           16    5631
XP_006716181                                                           16    5631
NP_002411                                                              16    7355
NP_001238953                                                           16    7355
NP_001238949                                                           16    7355
NP_596870                                                              16    7355
NP_689706                                                              16    7355
XP_005270565                                                           16    7355
XP_005270564                                                           16    7355
NP_055679                                                              16    7355
NP_940900                                                              16    7355
NP_689914                                                              15    9605
NP_001020029                                                           15    9605
NP_000338                                                              15    9605
NP_057321                                                              15    9605
NP_006409                                                              15    9605
XP_006720304                                                           15    9605
XP_005268080                                                           15    9605
XP_006719512                                                           15    9605
XP_005253957                                                           15    9605
NP_001131031                                                           15    9605
>NP_002515
          Length = 189

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1  NNSKSFANI 9
          NNSKSFA+I
Sbjct: 85 NNSKSFADI 93
>NP_848599
          Length = 3092

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N +K+FANI
Sbjct: 482 NKAKAFANI 490
>NP_671766
          Length = 1440

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>NP_671756
          Length = 1399

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>NP_003734
          Length = 1441

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>XP_006713081
          Length = 3964

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N +K+FANI
Sbjct: 482 NKAKAFANI 490
>XP_006712189
          Length = 1394

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 481 NNNRSYSNI 489
>XP_005264685
          Length = 1399

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>XP_005264684
          Length = 1399

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>XP_005264683
          Length = 1440

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>XP_005264682
          Length = 1441

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   NNSKSFANI 9
           NN++S++NI
Sbjct: 528 NNNRSYSNI 536
>NP_789765
          Length = 170

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>NP_001123914
          Length = 189

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>NP_005334
          Length = 189

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>NP_004976
          Length = 188

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>NP_203524
          Length = 189

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>XP_006725199
          Length = 170

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>XP_006719132
          Length = 189

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>XP_006718280
          Length = 170

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  NNSKSFANI 9
          NN+KSF +I
Sbjct: 85 NNTKSFEDI 93
>XP_005248250
          Length = 1074

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NN KSF N
Sbjct: 449 NNGKSFIN 456
>NP_444270
          Length = 1074

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NN KSF N
Sbjct: 449 NNGKSFIN 456
>NP_001180360
          Length = 779

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNS SF N
Sbjct: 750 NNSSSFLN 757
>NP_057051
          Length = 807

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNS SF N
Sbjct: 778 NNSSSFLN 785
>NP_036543
          Length = 752

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNS SF N
Sbjct: 723 NNSSSFLN 730
>XP_005270795
          Length = 783

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNS SF N
Sbjct: 754 NNSSSFLN 761
>NP_000713
          Length = 1091

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 973 NDSKSFSGV 981
>NP_057215
          Length = 200

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 2   NSKSFANI 9
           N KSF NI
Sbjct: 93  NGKSFENI 100
>NP_001248315
          Length = 199

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  NSKSFAN 8
          NSKS+AN
Sbjct: 70 NSKSWAN 76
>NP_001248311
          Length = 449

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 148 NSKSWAN 154
>NP_001248313
          Length = 341

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2  NSKSFAN 8
          NSKS+AN
Sbjct: 40 NSKSWAN 46
>NP_001128563
          Length = 361

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNSK F N
Sbjct: 245 NNSKLFPN 252
>NP_001035787
          Length = 471

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 170 NSKSWAN 176
>NP_060784
          Length = 379

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 170 NSKSWAN 176
>NP_001128564
          Length = 311

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNSK F N
Sbjct: 245 NNSKLFPN 252
>NP_001248312
          Length = 357

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 148 NSKSWAN 154
>NP_663625
          Length = 334

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNSK F N
Sbjct: 218 NNSKLFPN 225
>NP_001248314
          Length = 341

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 132 NSKSWAN 138
>XP_005253058
          Length = 215

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 2   NSKSFAN 8
           NSKS+AN
Sbjct: 170 NSKSWAN 176
>XP_005252857
          Length = 400

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNSK F N
Sbjct: 334 NNSKLFPN 341
>XP_006718211
          Length = 450

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   NNSKSFAN 8
           NNSK F N
Sbjct: 334 NNSKLFPN 341
>XP_006716184
          Length = 580

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 462 NDSKSFSGV 470
>XP_006716183
          Length = 1071

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 953 NDSKSFSGV 961
>XP_005250631
          Length = 1079

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 961 NDSKSFSGV 969
>XP_005250630
          Length = 1084

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 966 NDSKSFSGV 974
>XP_006716182
          Length = 1085

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 967 NDSKSFSGV 975
>XP_005250629
          Length = 1086

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 968 NDSKSFSGV 976
>XP_005250627
          Length = 1103

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   NNSKSFANI 9
           N+SKSF+ +
Sbjct: 985 NDSKSFSGV 993
>XP_006716181
          Length = 1110

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    NNSKSFANI 9
            N+SKSF+ +
Sbjct: 992  NDSKSFSGV 1000
>NP_002411
          Length = 1603

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   NNSKSFANI 9
           NNSK F  +
Sbjct: 671 NNSKDFGQL 679
>NP_001238953
          Length = 1625

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   NNSKSFANI 9
           NNSK F  +
Sbjct: 693 NNSKDFGQL 701
>NP_001238949
          Length = 1642

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   NNSKSFANI 9
           NNSK F  +
Sbjct: 710 NNSKDFGQL 718
>NP_596870
          Length = 5604

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3    SKSFANI 9
            +KSFAN+
Sbjct: 5264 AKSFANV 5270
>NP_689706
          Length = 420

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   SKSFAN 8
           SKSFAN
Sbjct: 261 SKSFAN 266
>XP_005270565
          Length = 407

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   SKSFAN 8
           SKSFAN
Sbjct: 248 SKSFAN 253
>XP_005270564
          Length = 407

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   SKSFAN 8
           SKSFAN
Sbjct: 248 SKSFAN 253
>NP_055679
          Length = 409

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   NNSKSFAN 8
           +N+KSF N
Sbjct: 309 DNAKSFGN 316
>NP_940900
          Length = 236

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1  NNSKSFAN 8
          +NSK F+N
Sbjct: 24 HNSKQFSN 31
>NP_689914
          Length = 5058

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    NSKSFANI 9
            N+K+F NI
Sbjct: 5008 NNKTFLNI 5015
>NP_001020029
          Length = 2328

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   NSKSFAN 8
           NS+ FAN
Sbjct: 326 NSRKFAN 332
>NP_000338
          Length = 2137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   NSKSFAN 8
           NS+ FAN
Sbjct: 326 NSRKFAN 332
>NP_057321
          Length = 755

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   NNSKSFA 7
           NN++SFA
Sbjct: 461 NNTESFA 467
>NP_006409
          Length = 510

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   NNSKSFANI 9
           NN  S+AN+
Sbjct: 370 NNRFSYANV 378
>XP_006720304
          Length = 2328

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   NSKSFAN 8
           NS+ FAN
Sbjct: 326 NSRKFAN 332
>XP_005268080
          Length = 2328

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   NSKSFAN 8
           NS+ FAN
Sbjct: 326 NSRKFAN 332
>XP_006719512
          Length = 357

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1  NNSKSFA 7
          NN++SFA
Sbjct: 63 NNTESFA 69
>XP_005253957
          Length = 742

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   NNSKSFA 7
           NN++SFA
Sbjct: 448 NNTESFA 454
>NP_001131031
          Length = 643

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   NNSKSFA 7
           NN++SFA
Sbjct: 349 NNTESFA 355
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.301    0.113    0.286 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 424,228
Number of extensions: 885
Number of successful extensions: 67
Number of sequences better than 10000.0: 67
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 67
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.3 bits)
S2: 28 (15.4 bits)

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