Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1135 XP_005262424 18 1135 NP_003827 17 4312 NP_057038 16 5631 XP_006719146 16 5631 NP_001013859 16 7355 NP_001013858 16 7355 NP_003541 16 7355 XP_005249935 16 7355 XP_005249934 16 7355 XP_006715851 16 7355 XP_005249933 16 7355 NP_078966 15 9605 NP_003310 15 9605 NP_597676 15 9605 NP_001243779 15 9605 NP_001018126 15 9605 NP_596869 15 9605 NP_002797 15 9605 XP_005246888 15 9605 XP_006712788 15 9605 XP_006712787 15 9605 XP_006712786 15 9605 NP_001254479 15 9605 NP_597681 15 9605>NP_722576 Length = 3080 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QIDMTT SQ Sbjct: 246 QIDMTTPSQ 254>XP_005262424 Length = 2875 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QIDMTT SQ Sbjct: 41 QIDMTTPSQ 49>NP_003827 Length = 383 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 +IDMTT S+ Sbjct: 368 KIDMTTFSK 376>NP_057038 Length = 318 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 ID+TTLS Sbjct: 54 IDLTTLS 60>XP_006719146 Length = 275 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 ID+TTLS Sbjct: 54 IDLTTLS 60>NP_001013859 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 640 QIDITTENQ 648>NP_001013858 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 640 QIDITTENQ 648>NP_003541 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 640 QIDITTENQ 648>XP_005249935 Length = 671 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 593 QIDITTENQ 601>XP_005249934 Length = 671 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 593 QIDITTENQ 601>XP_006715851 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 640 QIDITTENQ 648>XP_005249933 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 QIDMTTLSQ 9 QID+TT +Q Sbjct: 640 QIDITTENQ 648>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 QIDMTTL 7 Q+D+TTL Sbjct: 5012 QLDVTTL 5018>NP_003310 Length = 26926 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 16785 LDLTTLS 16791>NP_597676 Length = 27051 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 16910 LDLTTLS 16916>NP_001243779 Length = 34350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 24209 LDLTTLS 24215>NP_001018126 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 QIDMTTLSQ 9 QID+ LSQ Sbjct: 69 QIDLLKLSQ 77>NP_596869 Length = 33423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 23282 LDLTTLS 23288>NP_002797 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +DMTTL+ Sbjct: 114 LDMTTLT 120>XP_005246888 Length = 22663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 12522 LDLTTLS 12528>XP_006712788 Length = 24022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 13881 LDLTTLS 13887>XP_006712787 Length = 33978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 23837 LDLTTLS 23843>XP_006712786 Length = 35484 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 25343 LDLTTLS 25349>NP_001254479 Length = 35991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 25850 LDLTTLS 25856>NP_597681 Length = 27118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IDMTTLS 8 +D+TTLS Sbjct: 16977 LDLTTLS 16983Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.118 0.281 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 293,242 Number of extensions: 373 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |