Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_008835                                                              21     229
NP_001075109                                                           21     229
NP_997186                                                              17    3301
NP_001193976                                                           17    3301
NP_647537                                                              17    3301
NP_647538                                                              17    3301
XP_005260917                                                           17    3301
NP_065071                                                              17    4312
NP_036386                                                              17    4312
NP_113637                                                              17    4312
XP_006717988                                                           17    4312
XP_006717987                                                           17    4312
XP_006717986                                                           17    4312
XP_005270044                                                           17    4312
XP_005270045                                                           17    4312
XP_005249932                                                           17    4312
XP_005249931                                                           17    4312
XP_005249930                                                           17    4312
XP_005249929                                                           17    4312
XP_005249928                                                           17    4312
XP_005249927                                                           17    4312
XP_005249926                                                           17    4312
XP_005249925                                                           17    4312
XP_006715850                                                           17    4312
XP_005249924                                                           17    4312
XP_005249923                                                           17    4312
NP_777589                                                              17    4312
NP_277045                                                              16    5631
NP_060275                                                              16    5631
NP_003095                                                              16    5631
XP_006723315                                                           16    5631
XP_005259081                                                           16    5631
XP_006723314                                                           16    5631
XP_005259080                                                           16    5631
XP_006723313                                                           16    5631
NP_001128715                                                           16    7355
NP_001128717                                                           16    7355
NP_001128716                                                           16    7355
NP_001008657                                                           16    7355
NP_000347                                                              16    7355
NP_996847                                                              16    7355
NP_478066                                                              16    7355
NP_066554                                                              16    7355
NP_001182070                                                           16    7355
NP_004766                                                              16    7355
NP_003339                                                              16    7355
NP_001013007                                                           16    7355
XP_005261676                                                           16    7355
XP_006724320                                                           16    7355
XP_006724087                                                           16    7355
XP_006722642                                                           16    7355
XP_006722641                                                           16    7355
XP_005258444                                                           16    7355
XP_005268566                                                           16    7355
XP_005268565                                                           16    7355
XP_005268564                                                           16    7355
XP_005268563                                                           16    7355
XP_005268562                                                           16    7355
XP_005268561                                                           16    7355
XP_005268560                                                           16    7355
XP_005268559                                                           16    7355
NP_004767                                                              15    9605
NP_001231892                                                           15    9605
NP_001104488                                                           15    9605
NP_001104489                                                           15    9605
NP_660093                                                              15    9605
NP_068591                                                              15    9605
NP_003588                                                              15    9605
NP_892009                                                              15    9605
NP_001171187                                                           15    9605
NP_001171189                                                           15    9605
XP_005259559                                                           15    9605
XP_005259558                                                           15    9605
XP_006718432                                                           15    9605
XP_005253271                                                           15    9605
XP_006718431                                                           15    9605
XP_006718430                                                           15    9605
XP_006718429                                                           15    9605
XP_006718428                                                           15    9605
XP_006718427                                                           15    9605
XP_005246236                                                           15    9605
NP_703148                                                              15    9605
NP_859061                                                              15    9605
>NP_008835
          Length = 4128

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    RWPVAVQIR 9
            RWPVA QIR
Sbjct: 2628 RWPVAGQIR 2636
>NP_001075109
          Length = 4097

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    RWPVAVQIR 9
            RWPVA QIR
Sbjct: 2628 RWPVAGQIR 2636
>NP_997186
          Length = 1379

 Score = 16.9 bits (32), Expect =  3301
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2    WPVAVQI 8
            WP+ +QI
Sbjct: 1213 WPIKIQI 1219
>NP_001193976
          Length = 1156

 Score = 16.9 bits (32), Expect =  3301
 Identities = 3/8 (37%), Positives = 7/8 (87%)

Query: 2    WPVAVQIR 9
            WP+ +Q++
Sbjct: 1146 WPIKIQVQ 1153
>NP_647537
          Length = 1429

 Score = 16.9 bits (32), Expect =  3301
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2    WPVAVQI 8
            WP+ +QI
Sbjct: 1262 WPIKIQI 1268
>NP_647538
          Length = 1272

 Score = 16.9 bits (32), Expect =  3301
 Identities = 3/8 (37%), Positives = 7/8 (87%)

Query: 2    WPVAVQIR 9
            WP+ +Q++
Sbjct: 1262 WPIKIQVQ 1269
>XP_005260917
          Length = 1289

 Score = 16.9 bits (32), Expect =  3301
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2    WPVAVQI 8
            WP+ +QI
Sbjct: 1262 WPIKIQI 1268
>NP_065071
          Length = 1067

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 624 WPASVQV 630
>NP_036386
          Length = 690

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  WPVAVQI 8
          WPVAV +
Sbjct: 25 WPVAVAL 31
>NP_113637
          Length = 920

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 483 WPASVQV 489
>XP_006717988
          Length = 986

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 630 WPASVQV 636
>XP_006717987
          Length = 1073

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 630 WPASVQV 636
>XP_006717986
          Length = 1073

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 630 WPASVQV 636
>XP_005270044
          Length = 1073

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 630 WPASVQV 636
>XP_005270045
          Length = 1073

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 630 WPASVQV 636
>XP_005249932
          Length = 767

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 492 WPASVQV 498
>XP_005249931
          Length = 862

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 425 WPASVQV 431
>XP_005249930
          Length = 888

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 451 WPASVQV 457
>XP_005249929
          Length = 894

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 457 WPASVQV 463
>XP_005249928
          Length = 897

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 460 WPASVQV 466
>XP_005249927
          Length = 903

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 466 WPASVQV 472
>XP_005249926
          Length = 920

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 483 WPASVQV 489
>XP_005249925
          Length = 929

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 492 WPASVQV 498
>XP_006715850
          Length = 929

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 492 WPASVQV 498
>XP_005249924
          Length = 929

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 492 WPASVQV 498
>XP_005249923
          Length = 929

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 492 WPASVQV 498
>NP_777589
          Length = 894

 Score = 16.5 bits (31), Expect =  4312
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WP +VQ+
Sbjct: 457 WPASVQV 463
>NP_277045
          Length = 1401

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/5 (100%), Positives = 5/5 (100%)

Query: 2   WPVAV 6
           WPVAV
Sbjct: 168 WPVAV 172
>NP_060275
          Length = 963

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 798 QWSRAVQIR 806
>NP_003095
          Length = 357

 Score = 16.2 bits (30), Expect =  5631
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 2   WPVAVQI 8
           WPVA+ +
Sbjct: 304 WPVAISM 310
>XP_006723315
          Length = 617

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 452 QWSRAVQIR 460
>XP_005259081
          Length = 966

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 801 QWSRAVQIR 809
>XP_006723314
          Length = 968

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 803 QWSRAVQIR 811
>XP_005259080
          Length = 1064

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 899 QWSRAVQIR 907
>XP_006723313
          Length = 1066

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   RWPVAVQIR 9
           +W  AVQIR
Sbjct: 901 QWSRAVQIR 909
>NP_001128715
          Length = 1488

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   PVAVQIR 9
           PVAVQ++
Sbjct: 594 PVAVQVK 600
>NP_001128717
          Length = 1412

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   PVAVQIR 9
           PVAVQ++
Sbjct: 517 PVAVQVK 523
>NP_001128716
          Length = 1451

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   PVAVQIR 9
           PVAVQ++
Sbjct: 594 PVAVQVK 600
>NP_001008657
          Length = 958

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   PVAVQIR 9
           PVAVQ++
Sbjct: 594 PVAVQVK 600
>NP_000347
          Length = 1411

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   PVAVQIR 9
           PVAVQ++
Sbjct: 517 PVAVQVK 523
>NP_996847
          Length = 187

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 2   WPVAVQI 8
           WP  +QI
Sbjct: 172 WPAEIQI 178
>

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package