Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005742                                                              20     390
NP_671714                                                              20     390
XP_006715890                                                           20     390
XP_005250160                                                           20     390
XP_005250159                                                           20     390
NP_031382                                                              18    1482
XP_005250289                                                           18    1482
NP_055429                                                              17    3301
NP_004597                                                              17    4312
NP_001273003                                                           17    4312
NP_620278                                                              17    4312
XP_005262357                                                           17    4312
XP_006724744                                                           17    4312
XP_005262354                                                           17    4312
XP_006724743                                                           17    4312
XP_005262353                                                           17    4312
XP_005262352                                                           17    4312
NP_722516                                                              17    4312
NP_000833                                                              16    5631
NP_001137303                                                           16    5631
NP_060149                                                              16    5631
NP_001092902                                                           16    5631
XP_005257534                                                           16    5631
XP_005257533                                                           16    5631
XP_005257532                                                           16    5631
XP_005257531                                                           16    5631
XP_005257530                                                           16    5631
XP_005257529                                                           16    5631
XP_006718893                                                           16    5631
XP_006718892                                                           16    5631
XP_006718891                                                           16    5631
NP_001231892                                                           16    7355
NP_001104488                                                           16    7355
NP_001104489                                                           16    7355
NP_660093                                                              16    7355
NP_892009                                                              16    7355
XP_005261469                                                           16    7355
XP_006718432                                                           16    7355
XP_005253271                                                           16    7355
XP_006718431                                                           16    7355
XP_006718430                                                           16    7355
XP_006718429                                                           16    7355
XP_006718428                                                           16    7355
XP_006718427                                                           16    7355
NP_055107                                                              16    7355
NP_003646                                                              15    9605
NP_000918                                                              15    9605
NP_002139                                                              15    9605
NP_065912                                                              15    9605
NP_775922                                                              15    9605
XP_005267135                                                           15    9605
XP_005267133                                                           15    9605
>NP_005742
          Length = 3907

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   VITQLTANL 9
           +ITQLTANL
Sbjct: 206 IITQLTANL 214
>NP_671714
          Length = 3899

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   VITQLTANL 9
           +ITQLTANL
Sbjct: 206 IITQLTANL 214
>XP_006715890
          Length = 3860

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   VITQLTANL 9
           +ITQLTANL
Sbjct: 206 IITQLTANL 214
>XP_005250160
          Length = 3939

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   VITQLTANL 9
           +ITQLTANL
Sbjct: 206 IITQLTANL 214
>XP_005250159
          Length = 3952

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   VITQLTANL 9
           +ITQLTANL
Sbjct: 206 IITQLTANL 214
>NP_031382
          Length = 1761

 Score = 18.1 bits (35), Expect =  1482
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 2    ITQLTANL 9
            ITQLTAN+
Sbjct: 1590 ITQLTANI 1597
>XP_005250289
          Length = 1761

 Score = 18.1 bits (35), Expect =  1482
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 2    ITQLTANL 9
            ITQLTAN+
Sbjct: 1590 ITQLTANI 1597
>NP_055429
          Length = 1843

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   VITQLTAN 8
           VITQLT N
Sbjct: 653 VITQLTMN 660
>NP_004597
          Length = 1893

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>NP_001273003
          Length = 1895

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>NP_620278
          Length = 1872

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_005262357
          Length = 999

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_006724744
          Length = 1851

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_005262354
          Length = 1906

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_006724743
          Length = 1924

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_005262353
          Length = 1926

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>XP_005262352
          Length = 1927

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 77 LITELTAN 84
>NP_722516
          Length = 1826

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  VITQLTAN 8
          +IT+LTAN
Sbjct: 76 LITELTAN 83
>NP_000833
          Length = 1180

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            V+T+ TAN+
Sbjct: 1032 VVTRFTANI 1040
>NP_001137303
          Length = 1212

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            V+T+ TAN+
Sbjct: 1064 VVTRFTANI 1072
>NP_060149
          Length = 913

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>NP_001092902
          Length = 928

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257534
          Length = 831

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257533
          Length = 835

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257532
          Length = 928

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257531
          Length = 935

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257530
          Length = 943

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_005257529
          Length = 950

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           V+TQLT  L
Sbjct: 286 VVTQLTGTL 294
>XP_006718893
          Length = 1180

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            V+T+ TAN+
Sbjct: 1032 VVTRFTANI 1040
>XP_006718892
          Length = 1212

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            V+T+ TAN+
Sbjct: 1064 VVTRFTANI 1072
>XP_006718891
          Length = 1212

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            V+T+ TAN+
Sbjct: 1064 VVTRFTANI 1072
>NP_001231892
          Length = 2488

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1712 TQLTAN 1717
>NP_001104488
          Length = 2365

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1592 TQLTAN 1597
>NP_001104489
          Length = 1493

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   TQLTAN 8
           TQLTAN
Sbjct: 720 TQLTAN 725
>NP_660093
          Length = 2429

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1656 TQLTAN 1661
>NP_892009
          Length = 2432

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1656 TQLTAN 1661
>XP_005261469
          Length = 394

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VITQLTANL 9
           V+T +T+NL
Sbjct: 351 VVTDVTSNL 359
>XP_006718432
          Length = 1464

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   TQLTAN 8
           TQLTAN
Sbjct: 688 TQLTAN 693
>XP_005253271
          Length = 1481

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   TQLTAN 8
           TQLTAN
Sbjct: 705 TQLTAN 710
>XP_006718431
          Length = 1493

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   TQLTAN 8
           TQLTAN
Sbjct: 720 TQLTAN 725
>XP_006718430
          Length = 1551

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   TQLTAN 8
           TQLTAN
Sbjct: 775 TQLTAN 780
>XP_006718429
          Length = 2416

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1640 TQLTAN 1645
>XP_006718428
          Length = 2455

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1679 TQLTAN 1684
>XP_006718427
          Length = 2465

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    TQLTAN 8
            TQLTAN
Sbjct: 1689 TQLTAN 1694
>NP_055107
          Length = 412

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   VITQLTANL 9
           V+T +T+NL
Sbjct: 369 VVTDVTSNL 377
>NP_003646
          Length = 560

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   VITQLTAN 8
           +IT +TAN
Sbjct: 541 IITDVTAN 548
>NP_000918
          Length = 1280

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1   VITQLTANL 9
           VITQ  ANL
Sbjct: 835 VITQNIANL 843
>NP_002139
          Length = 340

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   ITQLTANL 9
           I +LTANL
Sbjct: 330 IRELTANL 337
>NP_065912
          Length = 514

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   ITQLTANL 9
           ++QLT+NL
Sbjct: 177 LSQLTSNL 184
>NP_775922
          Length = 6996

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1    VITQLTANL 9
            ++TQLT+ +
Sbjct: 4886 IVTQLTSQI 4894
>XP_005267135
          Length = 435

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   ITQLTANL 9
           ++QLT+NL
Sbjct: 98  LSQLTSNL 105
>XP_005267133
          Length = 514

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   ITQLTANL 9
           ++QLT+NL
Sbjct: 177 LSQLTSNL 184
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.321    0.129    0.310 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 260,333
Number of extensions: 305
Number of successful extensions: 52
Number of sequences better than 10000.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.9 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package