Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

NP_542417 Length = 2157 Score = 19.2 bits (38), Expect = 665 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 WMENISPF 8 WME +SPF Sbjct: 1631 WMEPLSPF 1638
>XP_006726175
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>XP_006726174
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006726087
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>XP_006726086
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006725985
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006725897
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>XP_006725896
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006725787
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>XP_006725786
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006725571
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>XP_006725570
          Length = 2156

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1630 WMEPLSPF 1637
>XP_006715254
          Length = 2086

 Score = 19.2 bits (38), Expect =   665
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1    WMENISPF 8
            WME +SPF
Sbjct: 1631 WMEPLSPF 1638
>NP_006260
          Length = 2156

 Score = 18.5 bits (36), Expect =  1135
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1   WMENISPF 8
           W++NI+P+
Sbjct: 919 WLQNINPY 926
>NP_001190187
          Length = 430

 Score = 18.1 bits (35), Expect =  1482
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   WMENISPFR 9
           W+EN +P R
Sbjct: 413 WLENANPVR 421
>NP_001273675
          Length = 634

 Score = 17.7 bits (34), Expect =  1935
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   WMENISPFR 9
           WM+  SPF+
Sbjct: 622 WMKTASPFQ 630
>NP_001273676
          Length = 489

 Score = 17.7 bits (34), Expect =  1935
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   WMENISPFR 9
           WM+  SPF+
Sbjct: 477 WMKTASPFQ 485
>NP_055921
          Length = 1467

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   WMENISPFR 9
           W+ NIS FR
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 1  WMENIS 6
          W++NIS
Sbjct: 41 WLDNIS 46
>XP_006717112
          Length = 486

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 1  WMENIS 6
          W++NIS
Sbjct: 41 WLDNIS 46
>XP_005251965
          Length = 486

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 1  WMENIS 6
          W++NIS
Sbjct: 41 WLDNIS 46
>NP_997639
          Length = 2176

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    MENISPFR 9
            +EN+SP R
Sbjct: 1721 LENVSPPR 1728
>NP_002017
          Length = 2355

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    MENISPFR 9
            +EN+SP R
Sbjct: 1811 LENVSPPR 1818
>NP_997643
          Length = 2330

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    MENISPFR 9
            +EN+SP R
Sbjct: 1811 LENVSPPR 1818
>NP_997647
          Length = 2477

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    MENISPFR 9
            +EN+SP R
Sbjct: 1902 LENVSPPR 1909
>NP_997641
          Length = 2296

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2    MENISPFR 9
            +EN+SP R
Sbjct: 1721 LENVSPPR 1728
>NP_919290
          Length = 909

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3   ENISPF 8
           EN++PF
Sbjct: 177 ENVAPF 182
>NP_001386
          Length = 384

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 1   WMENISPF 8
           W +N+S F
Sbjct: 261 WSQNLSRF 268
>NP_116195
          Length = 580

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 3   ENISPF 8
           ENI PF
Sbjct: 548 ENIKPF 553
>NP_001186308
          Length = 1855

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2    MENISP 7
            +ENISP
Sbjct: 1597 LENISP 1602
>NP_056045
          Length = 1704

 Score = 15.4 bits (28), Expect =  9605
 Identities = 3/7 (42%), Positives = 6/7 (85%)

Query: 1   WMENISP 7
           W++ +SP
Sbjct: 488 WLDKLSP 494
>NP_940853
          Length = 311

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2   MENISPF 8
           + NISPF
Sbjct: 104 LTNISPF 110
>NP_002290
          Length = 1927

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   WMENISPFR 9
           W E +SP R
Sbjct: 605 WAEPLSPER 613
>NP_003105
          Length = 926

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 1   WMENISP 7
           W E +SP
Sbjct: 576 WREKLSP 582
>NP_877416
          Length = 113

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  WMENISPFR 9
          ++EN SP+R
Sbjct: 50 FLENKSPWR 58
>NP_757367
          Length = 926

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 1   WMENISP 7
           W E +SP
Sbjct: 576 WREKLSP 582
>NP_758519
          Length = 783

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ENISPFR 9
           ENI PF+
Sbjct: 492 ENIRPFQ 498
>NP_001186916
          Length = 97

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1  WMENISPFR 9
          ++EN SP+R
Sbjct: 50 FLENKSPWR 58
>NP_056493
          Length = 2946

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 5/8 (62%)

Query: 1    WMENISPF 8
            W+  I PF
Sbjct: 2388 WLVRIEPF 2395
>NP_000751
          Length = 836

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ENISPFR 9
           ENI PF+
Sbjct: 492 ENIRPFQ 498
>NP_724781
          Length = 863

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   ENISPFR 9
           ENI PF+
Sbjct: 492 ENIRPFQ 498
>NP_665735
          Length = 155

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  MENISPF 8
          +ENI PF
Sbjct: 80 LENIIPF 86
>NP_665734
          Length = 155

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  MENISPF 8
          +ENI PF
Sbjct: 80 LENIIPF 86
>NP_665707
          Length = 155

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  MENISPF 8
          +ENI PF
Sbjct: 80 LENIIPF 86
>NP_001186307
          Length = 1856

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2    MENISP 7
            +ENISP
Sbjct: 1598 LENISP 1603
>NP_001020368
          Length = 380

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 3  ENISPF 8
          ENI PF
Sbjct: 39 ENIDPF 44
>NP_001009905
          Length = 361

 Score = 15.4 bits (28), Expect =  9605
 Identities = 3/8 (37%), Positives = 5/8 (62%)

Query: 1   WMENISPF 8
           W  ++ PF
Sbjct: 188 WFSHVGPF 195
>NP_071926
          Length = 1544

 Score = 15.4 bits (28), Expect =  9605
 Identities = 3/7 (42%), Positives = 6/7 (85%)

Query: 1   WMENISP 7
           W++ +SP
Sbjct: 293 WLDKLSP 299
>NP_066013
          Length = 1250

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 6/9 (66%)

Query: 1   WMENISPFR 9
           W+ N +P R
Sbjct: 368 WLHNGAPLR 376
>NP_001247440
          Length = 155

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  MENISPF 8
          +ENI PF
Sbjct: 80 LENIIPF 86
>NP_001243628
          Length = 386

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 1   WMENISPF 8
           W ++ SPF
Sbjct: 146 WFQSESPF 153
>NP_001004353
          Length = 308

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 1   WMENISPF 8
           W ++ SPF
Sbjct: 146 WFQSESPF 153
>NP_001005169
          Length = 324

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 5/8 (62%)

Query: 1   WMENISPF 8
           WM N  PF
Sbjct: 165 WMMNHLPF 172
>NP_064696
          Length = 155

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 2  MENISPF 8
          +ENI PF
Sbjct: 80 LENIIPF 86
>NP_387467
          Length = 1087

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 6/8 (75%)

Query: 2   MENISPFR 9
           +EN  PFR
Sbjct: 199 LENTIPFR 206
>NP_001243629
   Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.327    0.137    0.534 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 769,774
Number of extensions: 1894
Number of successful extensions: 243
Number of sequences better than 10000.0: 238
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 243
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.1 bits)
S2: 28 (15.4 bits)

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