HIVsirDB: A database of HIV inhibiting siRNAs

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HIVsir ID	HIV Strain	NCBI Accession	Target Gene	Position of siRNA target	Sense Sequence of siRNA	Efficacy (%)	Target Conservation *	Cell line	PubMed
1052	HIV-1 (NL4-3)	AF324493	Gag	896	GGGCAAGCAGGGAGCUAGAAC	0.00	331(22.13%)	SupT1	15527848
1053	HIV-1 (NL4-3)	AF324493	LTR	N/A	AGUGGCGCCCGAACAGGGAC	0.00	720(48.13%)	SupT1	15527848
1071	HIV-1 (LAI)	K02013	Nef	8553	GUGCCUGGCUAGAAGCACA	90.00	270(18.05%)	SupT1	15687388
1374	HIV-1 HXB2	K03455	rev/env	8509	GCCUGUGCCUCUUCAGCUA	90.00	675(45.12%)	SupT1	18068205
1544	HIV-1 (NL4-3)	AF324493	Vif	5049	CAGAUGGCAGAUGAUGCUUGU	97.00	0(0.00%)	SupT1	19397929
1547	HIV-1 (NL4-3)	AF324493	LTR	246	GCUUGCUGAAGCGCGCACGGC	92.00	83(5.55%)	SupT1	19556221
1601	HIV-1 (LAI)	K02013	Tat/Rev	4567	AUGGCAGGAAGAAGCGGAG	0.00	1100(73.53%)	SupT1	18077712
1600	HIV-1 (LAI)	K02013	Int	4567	GUGAAGGGGCAGUAGUAAU	100.00	1094(73.13%)	SupT1	18077712
1599	HIV-1 (LAI)	K02013	Pol	2128	ACAGGAGCAGAUGAUACAG	0.00	1276(85.29%)	SupT1	18077712
1598	HIV-1 (LAI)	K02013	Gag	1445	GAAGAAAUGAUGACAGCAU	0.00	1197(80.01%)	SupT1	18077712
1597	HIV-1 (LAI)	K02013	Nef	8553	GUGCCUGGCUAGAAGCACA	100.00	270(18.05%)	SupT1	14963165
1596	HIV-1 (LAI)	K02013	LTR	N/A	GGCUAGAAGGAGAGAGAUG	0.00	829(55.41%)	SupT1	14963165
1595	HIV-1 (LAI)	K02013	LTR	N/A	GCGGAGGCUAGAAGGAGAG	0.00	788(52.67%)	SupT1	14963165
1594	HIV-1 (LAI)	K02013	Tat/Rev	N/A	CCUAUGGCAGGAAGAAGCG	0.00	1240(82.89%)	SupT1	14963165
1593	HIV-1 (LAI)	K02013	Tat/Rev	N/A	GCCUUAGGCAUCUCCUAUG	0.00	56(3.74%)	SupT1	14963165
1592	HIV-1 (LAI)	K02013	LTR	N/A	GGGGGGACUGGAAGGGCUA	0.00	346(23.13%)	SupT1	14963165
1591	HIV-1 (LAI)	K02013	LTR	N/A	UGGCGCCCGAACAGGGACUU	0.00	381(25.47%)	SupT1	14963165
1590	HIV-1 (LAI)	K02013	LTR	N/A	GUGGCGCCCGAACAGGGACUU	0.00	380(25.40%)	SupT1	14963165
1675	HIV-1	NA	Nef	NA	CUGCCUGGCUAGAAGCACA	41.00	2(0.13%)	SupT1	18668146
1677	HIV-1NL4-3	AF324493	Env	7193	AGACAAGCACAUUGUAACA	0.00	298(19.92%)	SupT1	20833635