HIVsirDB: A database of HIV inhibiting siRNAs

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HIVsir ID	HIV Strain	NCBI Accession	Target Gene	Position of siRNA target	Sense Sequence of siRNA	Efficacy (%)	GC Content (%)	Cell line	PubMed
1377	HIV-1 (NL4-3)	AF324493	LTR	234	GACGCAGGACUCGGCUUGCU	46.00	52	Hela	18208841
1188	HIV-1 (LAI)	K02013	Tat/Rev	5549	CUAUGGCAGGAAGAAGCGG	46.00	46	293 T	16959541
1238	HIV-1 (NL4-3)	AF324493	LTR	575	GUGACUCUGGUAACUAGAGAU	46.40	35	Hela	17996047
1056	HIV-1 (NL4-3)	AF324493	Rev/Env	8415	AAGAAGAAGGUGGAGAGAGAG	47.00	38	293 T	15564478
1535	HIV-1 (LAI)	K02013	Tat/Rev	5551	AUGGCAGGAAGAAGCGGAG	48.00	46	293 T	20188764
1219	HIV-1 (LAI)	K02013	Pol	1910	ACAGGAGCAGAUGAUACAG	48.00	38	293 T	17628029
1218	HIV-1 (LAI)	K02013	Gag	1365	GAAGAAAUGAUGACAGCAU	48.00	29	293 T	17628029
1062	HIV-1 (NL4-3)	AF324493	Nef	9139	AAGGCUACUUCCCUGAUUGGC	48.00	42	293 T	15564478
1070	HIV-1 (IIIB)	EU541617	Nef	N/A	GCGUCGACGCAUUUCAUCACAUGGCCC	48.30	50	MT-4 T/Jurkat T	15601474
1063	HIV-1 (IIIB)	EU541617	Nef	N/A	GCGUCGACGGCAAGUGGUCAAAACGUA	48.30	47	MT-4 T/Jurkat T	15601474
1438	HIV-1 (NL4-3)	AF324493	Gag	535	GCCACCCCACAAGAUUUAAA	48.60	36	HEK 293a	19497094
1408	HIV-1 (LAI)	K02013	Gag	1365	GAAGAAAUGAUGACAGCAU	49.00	29	293 T	19384894
1060	HIV-1 (NL4-3)	AF324493	Nef	8834	AAGGGAAAGAAUGAGACGAGC	49.00	38	293 T	15564478
1622	NL4-3 clone 1-D4	AF078150	Int	158	GUAGACUGUAGCCCAGGAA	49.00	42	Hela	17592732
1240	HIV-1 (NL4-3)	AF324493	LTR	690	CGCAGGACUCGGCUUGCUGAA	49.30	50	Hela	17996047
1109	HIV-1 (NL4-3)	AF324493	LTR	9073	GACUGGAAGGGCUAAUUCA	50.00	38	293 T	16840344