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HIVsir ID
HIV Strain
NCBI Accession
Target Gene
Position of siRNA target
Sense Sequence of siRNA
Efficacy (%)
Target Conservation *
Cell line
PubMed
1359
93JP-NH1
AB052995
Pol
4175
UGGAGGAAAUGAACAAGUAGA
97.00
1096(73.26%)
Hela
17996047
1358
93JP-NH1
AB052995
Pol
3011
AGGAUCACCAGCAAUAUUCCA
94.10
774(51.74%)
Hela
17996047
1357
93JP-NH1
AB052995
Pol
3006
UGGAAAGGAUCACCAGCAAUA
85.30
957(63.97%)
Hela
17996047
1344
93JP-NH1
AB052995
LTR
689
ACGCAGGACUCGGCUUGCUGA
89.70
733(49.00%)
Hela
17996047
1345
93JP-NH1
AB052995
LTR
764
GACUAGCGGAGGCUAGAAGGA
97.10
752(50.27%)
Hela
17996047
1346
93JP-NH1
AB052995
LTR
770
CGGAGGCUAGAAGGAGAGAGA
97.10
776(51.87%)
Hela
17996047
1347
93JP-NH1
AB052995
Gag
1490
GUGACAUAGCAGGAACUACUA
97.10
899(60.09%)
Hela
17996047
1348
93JP-NH1
AB052995
Gag
1817
UAGAAGAAAUGAUGACAGCAU
94.10
1177(78.68%)
Hela
17996047
1349
93JP-NH1
AB052995
Gag
2075
GACAGGCUAAUUUUUUAGGGA
97.10
1015(67.85%)
Hela
17996047
1350
93JP-NH1
AB052995
Pol
2329
AGCAGUACAAAUGGCAGUAUU
95.60
1129(75.47%)
Hela
17996047
1351
93JP-NH1
AB052995
Pol
2330
AGGAGCAGAUGAUACAGUAUU
98.50
1159(77.47%)
Hela
17996047
1352
93JP-NH1
AB052995
Pol
2333
AGCAGAUGAUACAGUAUUAGA
92.60
1129(75.47%)
Hela
17996047
1353
93JP-NH1
AB052995
Pol
2485
GACCUACACCUGUCAACAUAA
86.80
888(59.36%)
Hela
17996047
1354
93JP-NH1
AB052995
Pol
2486
ACCUACACCUGUCAACAUAAU
73.50
888(59.36%)
Hela
17996047
1355
93JP-NH1
AB052995
Pol
3000
CAGGGAUGGAAAGGAUCACCA
92.60
883(59.02%)
Hela
17996047
1356
93JP-NH1
AB052995
Pol
3005
AUGGAAAGGAUCACCAGCAAU
94.10
923(61.70%)
Hela
17996047
1360
93JP-NH1
AB052995
Pol
4373
AGCCAUGCAUGGACAAGUAGA
75.00
658(43.98%)
Hela
17996047
1361
93JP-NH1
AB052995
Pol
4378
UGCAUGGACAAGUAGACUGUA
77.90
699(46.72%)
Hela
17996047
1362
93JP-NH1
AB052995
Pol
4746
AAGACAGCAGUACAAAUGGCA
95.60
1030(68.85%)
Hela
17996047
1363
93JP-NH1
AB052995
Pol
4750
CAGCAGUACAAAUGGCAGUAU
91.20
1133(75.74%)
Hela
17996047
1364
93JP-NH1
AB052995
Pol
4751
CAGUACAAAUGGCAGUAUUCA
94.10
1076(71.93%)
Hela
17996047
1365
93JP-NH1
AB052995
Pol
4794
GGGGGGAUUGGGGGGUACAGU
83.80
1139(76.14%)
Hela
17996047
1366
93JP-NH1
AB052995
Pol
4806
GGGUACAGUGCAGGGGAAAGA
85.30
1019(68.11%)
Hela
17996047
1367
93JP-NH1
AB052995
Pol
4809
UACAGUGCAGGGGAAAGAAUA
88.20
1195(79.88%)
Hela
17996047
1368
93JP-NH1
AB052995
Pol
4840
UAGCAACAGACAUACAAACUA
94.10
901(60.23%)
Hela
17996047
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