Browse Epitopes

This module is created to browse the epitopes predicted from vaccine candidates of all mycobacterial strains. This epitopes were predicted by creating 9mer overlapping peptides from the vaccine candidates from each mycobacterial species. We used a prediction pipeline for predicting the epitopes. Currently, you are browsing B cell epitopes from our compiled results. Here, the first column represent the unique Mtbeveb ID for each peptide sequences. The ID and peptide sequence is hyperlinked to epitope card. The next column contains Gene ID, which is hyperlinked to antigen card. The next column displays the detail of protien from NCBI notation. The fourth column presents the position of the peptide in that protein. This pipeline have the package for predicting linear B cell epitopes using LBtope, promiscous binder of MHC class I (Propred1) and MHC class II (Propred), CTL epitope (CTLpred), interferon-gamma inducing peptides (IFNepitope) and Interleukine 4 inducing peptides (IL4pred). The peptides can sorted at any header. The last three column present the field related to MHC class I prediction using Propred1. The second last tells us the MHC class I alleles to which peptide is binding. The last column counts the number of MHC class I alleles for that peptide.


Total number of predicted 9mer peptides are 1228129 (corresponding to browse type mhcI)



ID gene IDProtein DetailPositionSequence (9mer)MHC class I Alleles MHC class I alleles (count)
VIR004259339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]138VRVAGAYKA HLA-B*2702,HLA-B*2705,HLA-B*51,HLA-B*5301 4
VIR004261339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]140VAGAYKAPA HLA-B*0702,HLA-B*51,HLA-B*5101,HLA-B*5103,HLA-B*5301 5
VIR004263339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]142GAYKAPAET HLA-B*5101,HLA-B*5102,HLA-B*5103,HLA-B*5801 4
VIR004265339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]144YKAPAETQA HLA-A2,HLA-A20 Cattle,HLA-B*51,HLA-B*5301,HLA-B*5401 5
VIR004267339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]146APAETQAQR HLA-A20 Cattle,HLA-A*3302,HLA-A68.1 3
VIR004268339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]147PAETQAQRI HLA-B*5101,HLA-B*5102,HLA-B*5103 3
VIR004269339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]148AETQAQRIA HLA-B40,HLA-B*4403,HLA-B60,HLA-B61,MHC-Kk 5
VIR004270339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]149ETQAQRIAI HLA-B*5101,MHC-Kk 2
VIR004271339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]150TQAQRIAIT HLA-B*2702,HLA-B*5201,HLA-B62 3
VIR004272339630328 YP 004721970.1 heatshockproteinHsp[MycobacteriumafricanumGM041182]151QAQRIAITK HLA-A*1101,HLA-A3 2
Showing 1 to 10 of 1,000 entries