HPV Integration and Breakpoints

---

S.No.	HPV Type	HPV region	Viral Integrant/ Breakpoint	Human Chr. No.	Cytoband	Human Chr. location/ Cellular breakpoint	Target genes	Fragile Sites	Sample type/ Specimen	Sample Size	Cancer type/ Histology	Detection Technique	References
1	HPV16	E1	918	14	q24.1	68699686	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
2	HPV16	E4	3434	14	q24.1	68741700	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
3	HPV16	E5	3978	14	q24.1	68683570	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
4	HPV16	E6	447	13	q22.1	73620048	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
5	HPV16	E1	2363	13	q22.1	73619896	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
6	HPV16	E1	2419	11	q13.5	76087550	PRKRIR	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
7	HPV16	L1	5811	11	q13.5	76096216	LOC100506127	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
8	HPV16	E1	2096	11	q13.5	76083005	PRKRIR	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
9	HPV16	L1	5746	18	q21.33	61317176	SERPINB4	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
10	HPV16	L1	5726	18	q21.33	61463507	SERPINB7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
11	HPV16	E7	824	16	p13.3	1607717	IFT140	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
12	HPV16	E1	2421	16	p13.3	1611951	IFT140	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
13	HPV16	E1	2143	1	q25.1	173239973	LOC100506023	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
14	HPV16	E1	2209	1	q25.1	173240299	LOC100506023	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
15	HPV16	E1	1441	2	q24.1	157166460	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
16	HPV16	L2	5626	2	q24.1	157166440	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
17	HPV16	E1	2696	2	q24.1	157144597	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
18	HPV16	E5-L2	4194	2	q24.1	157181011	NR4A2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
19	HPV16	L1	6950	9	q34.11	131845205	DOLPP1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
20	HPV16	E1	2713	9	q34.11	131856075	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
21	HPV16	LCR	7812	9	q34.11	131856425	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
22	HPV16	E7	853	9	q34.11	131856760	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
23	HPV16	E1	1203	9	q34.11	131857931	CRAT	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
24	HPV16	L1	6038	9	q34.11	131860981	CRAT	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
25	HPV16	LCR	7520	11	q13.2	66871558	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
26	HPV16	LCR	7302	11	q13.2	66872295	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
27	HPV16	E7	680	21	q22.3	43114201	LINC00111	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
28	HPV16	E2	3020	21	q22.3	43114241	LINC00111	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
29	HPV16	E1	1308	21	q22.3	43084798	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
30	HPV16	E1	2219	21	q22.3	43067884	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
31	HPV16	E4	3404	21	q22.3	43087532	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
32	HPV16	E4	3423	21	q22.3	43098068	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
33	HPV16	L2	4419	21	q22.3	43059334	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
34	HPV16	L2	5101	21	q22.3	43114866	LINC00111	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
35	HPV16	E1	1486	19	p13.2	9331191	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
36	HPV16	E1	1751	19	p13.2	9331197	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
37	HPV16	E1	1572	9	p24.1	5388156	PLGRKT	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
38	HPV16	L1	6757	9	p24.1	5464509	CD274	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
39	HPV16	LCR	7848	9	p24.1	5464244	CD274	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
40	HPV16	E7	825	21	q22.2	40209626	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
41	HPV16	E1	2620	21	q22.2	40190628	ETS2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
42	HPV16	L2-L1	5572	21	q22.2	40187057	ETS2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
43	HPV16	E4	3357	X	q25	126094439	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
44	HPV16	L2	4616	X	q25	126094023	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
45	HPV16	E1	1565	18	q21.1	45664402	ZBTB7C	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
46	HPV16	L1	6324	18	q21.1	45664414	ZBTB7C	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
47	HPV16	E1	1669	17	q25.3	79827395	ARHGDIA	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
48	HPV16	E1	1855	3	q26.33	180346143	CCDC39	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
49	HPV16	L1	6157	3	q26.33	180328936	TTC14	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
50	HPV16	L1	6160	3	q26.33	180252894	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
51	HPV16	E1	1716	3	q26.33	180310599	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
52	HPV16	E1	1498	1	q31.2	191331460	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
53	HPV16	E1	2379	1	q31.2	191334412	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
54	HPV16	LCR	7239	1	q31.2	191334422	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
55	HPV16	L1	6157	4	q32.1	161729092	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
56	HPV16	E6	255	4	q32.1	161729100	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
57	HPV16	E1	1420	4	q32.1	161739760	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
58	HPV16	E1	1535	5	p15.33	3863129	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
59	HPV16	L2	5399	5	p15.33	3886481	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
60	HPV16	E7-E1	861	5	p15.33	3875126	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
61	HPV16	L2	4451	5	p15.33	3878131	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
62	HPV16	E2	3674	5	p15.33	3905745	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
63	HPV16	E2	2900	15	q26.1	91044734	IQGAP1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
64	HPV16	LCR	62	15	q26.1	91045204	IQGAP1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
65	HPV16	LCR	7547	16	p13.2	8014992	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
66	HPV16	LCR	7517	16	p13.2	8015221	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
67	HPV16	L1	5820	19	q13.31	45175831	CEACAM19	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
68	HPV16	L1	6925	X	p11.23	46529359	SLC9A7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
69	HPV16	E6	349	X	p11.23	46530236	SLC9A7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
70	HPV16	LCR	7651	X	p11.23	46570642	SLC9A7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
71	HPV16	LCR	7362	X	p11.23	46528787	SLC9A7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
72	HPV16	L1	6828	X	p11.23	46537460	SLC9A7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
73	HPV16	L1	7024	X	p11.23	48069410	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
74	HPV16	E5	4068	X	p22.2	12052364	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
75	HPV16	E6	337	X	p22.2	12054175	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
76	HPV16	LCR	7360	X	p22.2	12279942	FRMPD4	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
77	HPV16	LCR	7535	X	p22.2	12273715	FRMPD4	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
78	HPV16	LCR	7362	X	p22.2	12279925	FRMPD4	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
79	HPV16	L2-L1	5572	7	q21.11	77817658	MAGI2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
80	HPV16	L2	4425	7	q21.11	77818256	MAGI2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
81	HPV16	E1	2567	1	p31.3	67230089	TCTEX1D1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
82	HPV16	E1	882	20	q11.22	33629907	TRPC4AP	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
83	HPV16	L1	6456	20	q11.22	33638717	TRPC4AP	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
84	HPV16	L2	4488	21	q21.3	30912611	GRIK1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
85	HPV16	E1	2052	5	q14.3	84620039	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
86	HPV16	E1	1660	5	q14.3	84620062	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
87	HPV16	E1	1227	9	q31.2	111236984	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
88	HPV16	E1	2687	9	q31.3	111541205	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
89	HPV16	E1	2094	13	q22.1	73871216	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
90	HPV16	L2	5639	9	q31.2	110520480	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
91	HPV16	E1	1962	9	q31.2	110516346	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
92	HPV16	E1	1086	15	q26.1	90360419	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
93	HPV16	-	-	11	q13	-	PRDX5, ESRRA, CCDC88B	-	Cervical biopsy samples	40	LSIL	APOT assay, PCR	24992025
94	HPV16	-	-	11	q23.3	-	MPZL3, SCN2B	-	Cervical biopsy samples	40	LSIL	APOT assay, PCR	24992025
95	HPV16	-	-	10	q22.1	-	KIAA1279, DDX21 ACTBP14	FRA10D	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
96	HPV16	-	-	8	p23	-	ARHGEF10, MIR596, KBTBD11	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
97	HPV16	-	-	8	p23.3	-	LOC100131395	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
98	HPV16	-	-	8	q23.1	-	ANGPT1, PGAM1P13, HMGB1P46	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
99	HPV16	-	-	8	q23	-	EBAG9, PKHD1L1, SYBU	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
100	HPV16	-	-	19	q13.1	-	COX6B1, ETV2, UPK1A	FRA19A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
101	HPV16	-	-	19	q13.13	-	UPK1A, COX6B1, ZBTB32	FRA19A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
102	HPV16	-	-	12	q23.3	-	SLC41A2, KRT18P20, CHST11	FRA12E	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
103	HPV16	-	-	1	p36.22	-	MIR34A, LOC727721, GPR157	FRA1A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
104	HPV16	-	-	15	q21.3	-	RFX7, HMGB1P33, CD24P2	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
105	HPV16	-	-	13	q14.11	-	MRPS31, SLC25A15, FOXO1	FRA13A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
106	HPV16	-	-	13	q14.3	-	THSD1,VPS36, TPTE2P2	FRA13A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
107	HPV16	-	-	17	q25.1	-	EXOC7 , FOXJ1, ZACN	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
108	HPV16	-	-	2	p24	-	ROCK2, LOC650157, PQLC3	FRA2C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
109	HPV16	-	-	2	p21	-	MSH2 , EPCAM, LOC644093	FRA2C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
110	HPV16	-	-	16	q22.1	-	COG4 , SF3B3, FUK	FRA16C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
111	HPV16	-	-	16	q23.3	-	WWOX , LOC100131126, MAF	FRA16D	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
112	HPV16	-	-	16	q23	-	ADAMTS18 , NUDT7, VN2R10P	FRA16D	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
113	HPV16	-	-	16	q24.2	-	MAP1LC3B, FBXO31, NR3C1P1	FRA16D	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
114	HPV16	-	-	7	q36	-	LMBR1, NOM1, RNF32	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
115	HPV16	-	-	7	p14.3	-	NT5C3A, RP9, FKBP9	FRA7B	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
116	HPV16	-	-	9	q33	-	TNC, DEC1, TNFSF8	FRA9E	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
117	HPV16	-	-	9	q21.33	-	DAPK1, C9orf170, CTSL	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
118	HPV16	-	-	10	q25.3	-	ASCC1, ANAPC16, SPOCK2	FRA10D	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
119	HPV16	-	-	10	q21.2	-	ZNF365, RTKN2, ADO	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
120	HPV16	-	-	18	q21.1	-	SETBP1, KRT8P5, LOC10013166	FRA18B	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
121	HPV16	-	-	6	p24	-	MAK, GCM2, LOC100506379	-	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
122	HPV16	-	-	19	q13	-	ACTN4, EIF3K, CAPN12	FRA19A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
123	HPV16	-	-	4	q32-q33	-	TLL1, LOC646995, SPOCK3	FRA4C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
124	HPV16	-	-	5	q31	-	PCDHA, LOC100421074, PCDHB1	FRA5C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
125	HPV16	-	-	5	q31.1	-	Egr1, Reep2, RPL7P19	FRA5C	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
126	HPV16	-	-	14	q21.2	-	FANCM, SNORD127, MIS18BP1	FRA14A	Cervical biopsy samples	40	HSIL	APOT assay, PCR	24992025
127	HPV16	-	-	11	q13	-	PRDX5, ESRRA, CCDC88B	-	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
128	HPV16	-	-	13	q22.1	-	PIBF1, BORA, PSMD10P3	FRA13C	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
129	HPV16	-	-	22	q12.3	-	TIMP3, FBXO7, LARGE-AS1	FRA22B	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
130	HPV16	-	-	2	q37	-	AGAP1, Loc642692, Gbx2	FRA2J	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
131	HPV16	-	-	13	q14.11	-	MRPS31, SLC25A15, FOXO1	FRA13A	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
132	HPV16	-	-	2	q33	-	CD28, LOC100287498, KRT18P39	FRA2I	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
133	HPV16	-	-	2	p22-p21	-	EIF2AK2, SULT6B1, HEATR5B	FRA2C	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
134	HPV16	-	-	1	q25.3	-	CACNA1E, GM140, ZNF648	FRA1G	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
135	HPV16	-	-	3	p14.3	-	DENND6A, PDHA1P1, ARF4	FRA3B	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
136	HPV16	-	-	7	q21.11	-	SEMA3E, SEMA3A, PCLO	FRA7E	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
137	HPV16	-	-	8	q23	-	EBAG9, PKHD1L1, SYBU	-	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
138	HPV16	-	-	4	p13	-	RHOH, N4BP2, CHRNA9	-	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
139	HPV16	-	-	13	q14.11	-	MRPS31, SLC25A15, FOXO1	FRA13A	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
140	HPV16	-	-	19	p13.3-p13.2	-	INSR , LOC100996504, MBD3L3	FRA19B	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
141	HPV16	-	-	19	q12	-	CCNE1, PLEKHF1, LOC126170	-	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
142	HPV16	-	-	9	q21.33	-	DAPK1, C9orf170, CTSL	-	Cervical biopsy samples	40	CC	APOT assay, PCR	24992025
143	HPV16	E1	1540	8	q24.21	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
144	HPV16	E4	3348	2	q35	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
145	HPV16	E2	3161	1	q32.1	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
146	HPV16	E1	1786	1	p36.22	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
147	HPV16	E2	3166	17	q24.3	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
148	HPV16	E1	2508	9	q21.31	-	-	-	Cancer Biopsy samples	25	VaIN3	DIPS, PCR	25218242
149	HPV16	L2	4989	3	q26.31	-	-	-	Cancer Biopsy samples	25	VIN3	DIPS, PCR	25218242
150	HPV16	L2	5003	18	p11.31	-	-	-	CU-VA-9 clonal cell line	1	VaIN3	DIPS, PCR	25218242
151	HPV16	E1	2490	11	p15.3	-	-	-	CU-VA-9 clonal cell line	1	VaIN3	DIPS, PCR	25218242
152	HPV16	E4	3716	18	p11.31	-	-	-	CU-VA-9 clonal cell line	1	VaIN3	APOT assay, PCR	25218242
153	HPV16	E1	882	5	q11.2	-	-	-	CU-VA-9 clonal cell line	1	VaIN3	APOT assay, PCR	25218242
154	HPV16	E1	1194	3	q28	-	-	-	CU-VI-8 clonal cell line	1	VIN3	DIPS, PCR	25218242
155	HPV16	E1:E2	2201-3147	-	-	-	-	-	CU-VI-8 clonal cell line	1	VIN3	DIPS, PCR	25218242
156	HPV16	E2	3167	3	q21.31	-	-	-	CU-VI-8 clonal cell line	1	VIN3	DIPS, PCR	25218242
157	HPV16	E1	880	3	q28	-	-	-	CU-VI-8 clonal cell line	1	VIN3	APOT assay, PCR	25218242
158	HPV16	E1	882	3	p21.31	-	-	-	CU-VI-8 clonal cell line	1	VIN3	APOT assay, PCR	25218242
159	HPV16	E1	1455	X	q27.3	-	-	-	Cancer cell lines	1	CaSki	DIPS	24880069
160	HPV16	E2:L1	2857-6561	-	-	-	-	-	Cancer cell lines	1	CaSki	DIPS	24880069
161	HPV16	L2:E6	6901-470	13	q22.1	-	-	-	Cancer cell lines	1	CaSki	DIPS	24880069
162	HPV16	E2	3132	-	-	-	-	-	Cancer cell lines	1	SiHa	DIPS	24880069
163	HPV16	L2:URR	4880-7673	3	q28	-	-	-	CU-VI-8Y clonal lines	1	VIN3	DIPS, PCR	24898764
164	HPV16	E1	1194	3	q28	-	-	-	CU-VI-8Y clonal lines	1	VIN3	DIPS, PCR	24898764
165	HPV16	E1	2116	3	p21.31	-	-	-	CU-VI-8Y clonal lines	1	VIN3	DIPS, PCR	24898764
166	HPV16	E2	3167	3	p21.31	-	-	-	CU-VI-8Y clonal lines	1	VIN3	DIPS, PCR	24898764
167	HPV16	E1	880	3	q28	-	-	-	CU-VI-8Y clonal lines	1	VIN3	APOT assay, PCR	24898764
168	HPV16	E1	882	3	p21.31	-	-	-	CU-VI-8Y clonal lines	1	VIN3	APOT assay, PCR	24898764
169	HPV16	-	-	1	q32.3	214139243-214209138	PROX1	-	Tumor sample	115	SCC	RNA-seq	24390348
170	HPV16	-	-	1	q32.3	214139309-214198802	PROX1	-	Tumor sample	115	SCC	RNA-seq	24390348
171	HPV16	-	-	1	q44	244230252-244243606	-	FRA1I	Tumor sample	115	SCC	RNA-seq	24390348
172	HPV16	-	-	2	p14	66562040-66582275	-	FRA2E	Tumor sample	115	SCC	RNA-seq	24390348
173	HPV16	-	-	2	q14.2	121604585-121757551	GLI2	-	Tumor sample	115	SCC	RNA-seq	24390348
174	HPV16	-	-	2	q22.3	146433284-146455354	-	FRA2K	Tumor sample	115	SCC	RNA-seq	24390348
175	HPV16	-	-	2	q22.3	146478434-146574722	-	-	Tumor sample	115	AC	RNA-seq	24390348
176	HPV16	-	-	6	q24.1	157179613-157203871	ARID1B, NR4A2	-	Tumor sample	115	SCC	RNA-seq	24390348
177	HPV16	-	-	3	p14.2	59283902-59289544	-	FRA3B or FHIT	Tumor sample	115	SCC	RNA-seq	24390348
178	HPV16	-	-	3	q26.2	170786642-170797446	TNIK	-	Tumor sample	115	SCC	RNA-seq	24390348
179	HPV16	-	-	3	q26.32	177076803-177083464	-	-	Tumor sample	115	SCC	RNA-seq	24390348
180	HPV16	-	-	4	q22.2	94788822-94789178	-	FRA4F	Tumor sample	115	SCC	RNA-seq	24390348
181	HPV16	-	-	7	p13	43684947-43810323	BLVRA, COA1	FRA7D	Tumor sample	115	SCC	RNA-seq	24390348
182	HPV16	-	-	8	q24.3	141551192-141618477	AGO2, EIF2C2	FRA8D	Tumor sample	115	SCC	RNA-seq	24390348
183	HPV16	-	-	8	q24.3	141551220-141603490	AGO2, EIF2C2	FRA8D	Tumor sample	115	Adenosquamous carcinoma	RNA-seq	24390348
184	HPV16	-	-	9	q22.32	97811084-97958920	FANCC, C9orf3	-	Tumor sample	115	SCC	RNA-seq	24390348
185	HPV16	-	-	9	q32	115585103-115618350	SNX30	FRA9B	Tumor sample	115	SCC	RNA-seq	24390348
186	HPV16	-	-	9	q34.11	132251574-132265976	LINC00963	-	Tumor sample	115	SCC	RNA-seq	24390348
187	HPV16	-	-	12	q21.33	89814747-89818872	POC1B	FRA12B	Tumor sample	115	SCC	RNA-seq	24390348
188	HPV16	-	-	13	q21.33	72413228-72462826	DACH1	FRA13E	Tumor sample	115	SCC	RNA-seq	24390348
189	HPV16	-	-	14	q24.1	68596826-68607359	RAD51B	FRA14C	Tumor sample	115	AC	RNA-seq	24390348
190	HPV16	-	-	14	q32.2	99620081-99777561	BCL11B	-	Tumor sample	115	SCC	RNA-seq	24390348
191	HPV16	-	-	16	p13.12	14713455-14772647	PARN, BFAR, PLA2G10	FRA16A	Tumor sample	115	SCC	RNA-seq	24390348
192	HPV16	-	-	17	q12	37813310-37921347	STARD3, TCAP, PNMT, PGAP3, ERBB2, C17orf37, GRB7, IKZF3	-	Tumor sample	115	SCC	RNA-seq	24390348
193	HPV16	-	-	17	q12	37850235-37895008	ERBB2, C17orf37, GRB7	-	Tumor sample	115	SCC	RNA-seq	24390348
194	HPV16	-	-	17	q21.2	38465538-38487281	RARA	-	Tumor sample	115	SCC	RNA-seq	24390348
195	HPV16	-	-	17	q25.3	79805223-79821123	P4HB	-	Tumor sample	115	SCC	RNA-seq	24390348
196	HPV16	-	-	19	q13.2	42215341-42223935	CEACAM5	FRA19A	Tumor sample	115	AC	RNA-seq	24390348
197	HPV16	-	-	19	q13.2	42224737-42233185	CEACAM5	FRA19A	Tumor sample	115	AC	RNA-seq	24390348
198	HPV16	-	-	20	q12	41599211-41658674	PTPRT	-	Tumor sample	115	SCC	RNA-seq	24390348
199	HPV16	-	-	X	p22.31	8061727-8087826	-	FRAXB	Tumor sample	115	SCC	RNA-seq	24390348
200	HPV16	-	-	X	p11.4	41077799-41082064	USP9X	FRAXB	Tumor sample	115	SCC	RNA-seq	24390348
201	HPV16	-	-	3	q26.2	170797663-170798008	TNIK	-	Tumor sample	115	SCC	WGS	24390348
202	HPV16	-	-	7	q11.21	61969189-61969322	-	FRA7J	Tumor sample	115	SCC	WGS	24390348
203	HPV16	-	-	12	q12	41556195-41580912	-	FRA12A	Tumor sample	115	SCC	WGS	24390348
204	HPV16	-	-	13	q31.2	88918788-88932977	-	-	Tumor sample	115	SCC	WGS	24390348
205	HPV16	-	-	20	q13.33	61031494-61070167	GATA5	-	Tumor sample	115	SCC	WGS	24390348
206	HPV16	E2	3005	1	q32.1	204168342	GOLT1A	FRA1K	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
207	HPV16	E1	1392	3	p14.3	55545015	ERC2	FRA3B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
208	HPV16	E1	1366	Y	q11.223	27100111	-	-	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
209	HPV16	E1	2383	2	p23.2	28508231	BRE	FRA2C	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
210	HPV16	E1	2253	17	q21.2	39827047	JUP	FRA17B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
211	HPV16	E1	2313	18	q12.2	33076259	INO80C	FRA18A	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
212	HPV16	E1	2119	6	q16.1	94112296	EPHA7	FRA6G	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
213	HPV16	E1	1403	3	q28	189782873	LEPREL1	FRA3C	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
214	HPV16	E1	1767	22	q12.3	33262720	SYN3	FRA22B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
215	HPV16	E2	3351	15	q24.1	73615951	HCN4	FRA15A	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
216	HPV16	E1	1538	15	q25.1	80225117	-	FRA15A	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
217	HPV16	E2	3097	6	q21	114267275	HDAC2	FRA6F	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
218	HPV16	E1	1334	22	q11.23	25233023	SGSM1	FRA22B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
219	HPV16	E1	1340	12	q24.1	111918119	ATXN2	FRA12C	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
220	HPV16	E2	3061	17	q23.1	57921102	(TUBD1 16 kB ds)	FRA17B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
221	HPV16	E1	2283	7	p15	30661954	GARS	FRA7C	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
222	HPV16	E2	3283	13	q21.31	65063287	-	FRA13C	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
223	HPV16	E2	2875	17	q21.2	39678949	-	FRA17B	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
224	HPV16	E1	1124	7	q21.1	99750064	LAMTOR4, C7orf59	FRA7F	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
225	HPV16	E2	2894	8	q24.21	128266756	CASC21	FRA8D	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
226	HPV16	E2	2908	7	q22.2	104159073	LHFPL3	FRA7F	Fresh frozen clinical OSCC samples	75	OSCC	DIPS-PCR	24586376
227	HPV16	E2	3005	8	p12.3	64769670	LOC102724623	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
228	HPV16	E1	1392	8	p12.3	64812858	LOC102724623	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
229	HPV16	E1	1366	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
230	HPV16	E1	2383	2	p23.2	28490696	BRE	FRA2C	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
231	HPV16	E1	2253	17	q21	39824881	JUP	FRA17B	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
232	HPV16	E1	2313	18	q12.2	33079015	INO80C	FRA18A	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
233	HPV16	E1	2119	6	q15	89790877	PNRC1	FRA6G	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
234	HPV16	-	-	1	p36.33	564778	LOC100652939	FRA1A	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
235	HPV16	E1	1403	3	q28	189567320	TP63	FRA3C	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
236	HPV16	E1	1767	22	q12.3	32302191	DEPDC5	FRA22B	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
237	HPV16	E2	3351	5	q13	69451328	LOC100170939	FRA5B	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
238	HPV16	E1	1538	15	q14	39692287	-	FRA15A	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
239	HPV16	E2	3097	14	q32.32	103336522	TRAF3	FRA14C	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
240	HPV16	E1	1334	22	q13.31	45346809	PHF21B	FRA22A	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
241	HPV16	E1	1340	12	q24.1	111908546	ATXN2	FRA12C	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
242	HPV16	E2	3061	17	q23.1	57947254	TUBD1	FRA17B	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
243	HPV16	E1	2283	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
244	HPV16	E2	3283	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
245	HPV16	E2	2875	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
246	HPV16	E1	1124	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
247	HPV16	E2	2894	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
248	HPV16	E2	2908	-	-	-	-	-	Fresh frozen clinical OSCC samples	75	OSCC	APOT assay, PCR	24586376
249	HPV16	E1	910	1	p36.22	10697545	CASZ1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
250	HPV16	E1	975	X	q27.3	144778296	SLITRK2	-	CaSki	51	CC	Multiplex RT-PCR, APOT assay	23824673
251	HPV16	E1	999	9	p23	13858043	LINC00583	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
252	HPV16	E1	1027	18	p11.32	1506143	LINC00470	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
253	HPV16	E1	1028	15	q26.1	90729527	SEMA4B	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
254	HPV16	E1	1030	4	q35.2	191040400	DUX4L2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
255	HPV16	E1	1224	8	q24.21	128675817	MYC	-	MRI-H186	51	CC	Multiplex RT-PCR, APOT assay	23824673
256	HPV16	E1	1226	9	q33.3	126291635	DENND1A	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
257	HPV16	E1	1228	9	p13.3	33980798	UBAP2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
258	HPV16	E1	1354	17	q23.2	57908866	VMP1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
259	HPV16	E1	1529	X	q25	124850317	DCAF12L2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
260	HPV16	E1	1642	3	q26.33	182088476	ATP11B	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
261	HPV16	E1	1703	X	p22.11	24564835	PDK3	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
262	HPV16	E1	1794	12	p13.2	12233422	BCL2L14	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
263	HPV16	E1	1813	7	q11.21	61969363	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
264	HPV16	E1	1841	4	q23	100450200	C4orf17	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
265	HPV16	E1	1921	3	p14.2	60535200	FHIT	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
266	HPV16	E1	1932	-	-	-	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
267	HPV16	E1	1948	5	p15.32	4583408	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
268	HPV16	E1	1953	13	q22.1	73677253	KLF5	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
269	HPV16	E1	1973	10	p14	11742450	USP6NL	-	CaSki	51	CC	Multiplex RT-PCR, APOT assay	23824673
270	HPV16	E1	2019	19	p13.3	963052	ARID3A	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
271	HPV16	E1	2080	3	q28	190056682	CLDN1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
272	HPV16	E1	2132	19	p13.11	19610972	GATAD2A	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
273	HPV16	E1	2143	6	q22.32	126782491	CENPW	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
274	HPV16	E1	2146	13	q22.1	73999476	KLF5	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
275	HPV16	E1	2198	16	p13.13	11918118	BCAR4	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
276	HPV16	E1	2344	10	q24.2	100058840	LOXL4	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
277	HPV16	E1	2350	6	p21.1	44184762	SLC29A1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
278	HPV16	E1	2353	8	q24.21	128396523	POU5F1B	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
279	HPV16	E1	2406	20	p12.1	14886856	MACROD2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
280	HPV16	E1	2412	2	q33.3	206103492	PARD3B	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
281	HPV16	E1	2412	14	q23.2	62135042	HIF1A	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
282	HPV16	E1	2461	17	p11.2	19657318	ULK2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
283	HPV16	E1	2470	20	p12.2	11159613	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
284	HPV16	E1	2564	18	p11.32	1493334	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
285	HPV16	E1	2574	3	p21.31	49319411	USP4	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
286	HPV16	E1	2590	9	p21.2	26947928	IFT74	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
287	HPV16	E1	2612	10	q24.2	100058865	PYROXD2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
288	HPV16	E1	2615	4	q21.1	78848346	MRPL1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
289	HPV16	E1	2627	8	q23.2	111272354	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
290	HPV16	E1	2637	13	q22.2	74255979	KLF12	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
291	HPV16	E1	2686	8	q23.3	113482518	CSMD3	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
292	HPV16	E1	2725	15	q22.2	58836257	LIPC	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
293	HPV16	E1	2754	8	q24.21	128746603	MYC	-	MRI-H186	51	CC	Multiplex RT-PCR, APOT assay	23824673
294	HPV16	E1:E2	2774	2	q23.1	149157969	MBD5	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
295	HPV16	E2	2823	2	p22.3	34896821	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
296	HPV16	E2	2868	3	p14.2	60486966	FHIT	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
297	HPV16	E2	2886	2	p23.2	27869153	GPN1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
298	HPV16	E2	2949	X	p22.31	7521372	STS	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
299	HPV16	E2	2970	2	p23.2	27869352	GPN1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
300	HPV16	E2	2970	17	q21.31	37862307	ERBB2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
301	HPV16	E2	2987	X	q27.3	144789749	SLITRK2	-	CaSki	51	CC	Multiplex RT-PCR, APOT assay	23824673
302	HPV16	E2	2990	4	q13.3	74540049	IL8	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
303	HPV16	E2	3010	2	q33.1	201823720	ORC2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
304	HPV16	E2	3018	X	p22.13	17517026	NHS	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
305	HPV16	E2	3048	3	q26.2	169306956	MECOM	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
306	HPV16	E2	3059	7	p15.1	28835005	CREB5	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
307	HPV16	E2	3115	1	p36.22	10699282	CASZ1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
308	HPV16	E2	3133	13	q22.1	74087562	KLF5	-	SiHa	51	CC	Multiplex RT-PCR, APOT assay	23824673
309	HPV16	E2	3281	13	q22.2	74226231	KLF12	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
310	HPV16	E2	3286	5	p14.1	25574739	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
311	HPV16	E2	3337	18	q12.2	34242009	FHOD3	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
312	HPV16	E2	3413	X	p22.11	24333382	FAM48B2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
313	HPV16	E2	3489	2	q34	212251450	ERBB4	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
314	HPV16	E2	3564	17	q21.31	37818061	STARD3	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
315	HPV16	E2	3596	2	q22.3	146512049	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
316	HPV16	E2	3667	2	q36.3	230045578	PID1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
317	HPV16	E2	3729	6	p12.3	45659125	RUNX2	-	CaSki	51	CC	Multiplex RT-PCR, APOT assay	23824673
318	HPV16	E5	3858	11	p11.2	47967861	PTPRJ	-	MRI-H196	51	CC	Multiplex RT-PCR, APOT assay	23824673
319	HPV16	E5	3881	-	-	-	-	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
320	HPV16	E5	3888	20	q11.22	32116640	CBFA2T2	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
321	HPV16	E5	3890	19	p13.3	2080380	MOB3A	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
322	HPV16	E5	3897	19	q11	30498221	URI1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
323	HPV16	L2	4338	1	p36.22	10707431	CASZ1	-	CC biopsies, Tumor	51	CC	Multiplex RT-PCR, APOT assay	23824673
324	HPV16	E2	3105-3132	13	q22.1	74087562-74087537	-	-	SiHa	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
325	HPV16	E2:E4	3384-3417	13	q22.1	73789077-73788866	-	-	SiHa	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
326	HPV16	E6	84-107	3	q23	140480013-140479936	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
327	HPV16	E6	450-474	14	q21.3	47984368-47984397	MDGA2	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
328	HPV16	E6	469-495	20	p11.1	26257343-26257366	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
329	HPV16	E7	582-607	19	q13.42	55821546-55821576	BRSK1	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
330	HPV16	E7	685-719	7	p11.2	54144011-54144039	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
331	HPV16	E1	950-975	X	q27.3	144778296-144778324	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
332	HPV16	E1	1242-1272	21	q21.1	21954751-21954788	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
333	HPV16	E1	1364-1392	2	p23.3	27358998-27359046	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
334	HPV16	E1	1430-1455	X	q27.3	144775156-144775186	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
335	HPV16	E1	1817-1838	19	q13.42	55804440-55804413	BRSK1	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
336	HPV16	E1	1930-1920	X	q27.3	144798049-144798093	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
337	HPV16	E1	2030-2057	2	p24.1	22702082-22702053	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
338	HPV16	E1	2246-2280	6	p21.1	45659179-45659154	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
339	HPV16	E2	2965-2986	X	q27.3	144789749-144789773	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
340	HPV16	E2	3091-3111	X	q27.3	144770261-144770277	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
341	HPV16	E2	3156-3182	X	q27.3	144798010-144798032	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
342	HPV16	E2	3199-3226	7	p22.1	6964845-6964819	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
343	HPV16	E2	3230-3263	19	q13.42	55816527-55816490	BRSK1	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
344	HPV16	E4	3486-3513	19	q13.42	55821562-55821587	BRSK1	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
345	HPV16	E2	3704-3728	6	p21.1	45659121-45659097	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
346	HPV16	L2	4541-4578	7	p21.3	7679158-7679190	RPA3	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
347	HPV16	L2	4564-4593	7	p21.3	7680926-7680957	RPA3, UMAD1, LOC729852	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
348	HPV16	L2	4598-4613	X	q27.3	144798049-144798093	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
349	HPV16	L2	4940-4962	2	p23.3	27318140-27318113	KHK	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
350	HPV16	L2	5380-5404	2	p24.1	22645646-22645618	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
351	HPV16	L2	5437-5464	7	p21.3	7628821-7628904	MIOS	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
352	HPV16	L2	5441-5464	7	p21.3	7628821-7628846	MIOS	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
353	HPV16	L2	5454-5464	7	p11.2	7041846-7041820	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
354	HPV16	L2	5597-5621	7	q11.21	62984329-62984355	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
355	HPV16	L1	5957-5987	2	p24.1	22662013-22662035	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
356	HPV16	L1	6801-6827	2	p24.1	22639092-22639065	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
357	HPV16	L1	6876-6902	19	q13.42	55818769-55818824	BRSK1	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
358	HPV16	LCR	7219-7256	14	q12	25288208-25288180	STXBP6	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
359	HPV16	LCR	7259-7359	2	p24.1	22639132-22639102	-	-	CaSki	Cell line	CC	FISH, WGS, RNA-seq, qPCR	24201445
360	HPV16	LCR	7876-7901	2	p23.3	27360017-27360043	PRR30, C2orf53	-	CaSki	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
361	HPV16	E2	3651-3682	17	p11.2	19609637-19609611	SLC47A2	-	UM-SCC-104	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
362	HPV16	E2	3694-3722	17	p11.2	19609671-19609643	SLC47A2	-	UM-SCC-104	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
363	HPV16	E1	1361-1400	X	q21.33	96380863-96380894	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
364	HPV16	E1	2324-2365	X	q21.33	96215084-96215121	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
365	HPV16	E2	3073-3104	X	q21.33	96369879-96369903	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
366	HPV16	E2	3245-3274	X	q21.33	96373444-96373470	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
367	HPV16	L2	4983-5025	X	q21.33	96215084-96215121	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
368	HPV16	L2	5459-5486	X	q21.33	96238745-96238769	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
369	HPV16	LCR	7863-7890	X	q21.33	96375642-96375600	DIAPH2	-	UD-SCC-2	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
370	HPV16	E2	3249-3265	3	q28	189596834-189596814	TP63	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
371	HPV16	E2	3719-3745	3	q28	189612825-189612849	TP63	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
372	HPV16	E5	3858-3901	3	q28	189597479-189597513	TP63	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
373	HPV16	E5	3955-3977	3	q28	189620958-189620988	-	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
374	HPV16	L1	6636-6666	3	q28	189607490-189607462	TP63	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
375	HPV16	L1	6671-6698	3	q28	189601595-189601562	TP63	-	UM-SCC-47	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
376	HPV16	E6	279-317	9	q22.33	100707913-100707995	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
377	HPV16	E7	659-692	9	q22.33	100653571-100653544	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
378	HPV16	E7	681-694	9	q22.33	100575645-100575617	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
379	HPV16	E7	822-847	9	q22.33	100620041-100620065	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
380	HPV16	E1	1048-1072	3	p12.2	82275717-82275739	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
381	HPV16	E1	1284-1308	9	q22.33	100596047-100596022	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
382	HPV16	E1	1406-1435	9	q22.33	100706106-100706076	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
383	HPV16	E1	1409-1436	9	q22.33	100706106-100706084	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
384	HPV16	E1	1464-1482	6	p21.2	37143517-37143550	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
385	HPV16	E1	1755-1824	9	q22.33	100575623-100575598	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
386	HPV16	E1	1886-1916	9	q22.33	100638320-100638345	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
387	HPV16	E1	2006-2034	9	q22.33	100712492-100712460	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
388	HPV16	E1	1968-2062	9	q22.33	100676884-100676860	C9orf156	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
389	HPV16	E1	2625-2654	9	q22.33	100647590-100647621	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
390	HPV16	E2	3230-3264	9	q22.33	100663585-100663620	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
391	HPV16	L2	4353-4380	9	q22.33	100691903-100691782	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
392	HPV16	L2	4762-4703	6	p21.2	36878593-36878572	C6orf89	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
393	HPV16	L2	4692-4716	9	q22.33	100665235-100665211	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
394	HPV16	L2	4923-4952	6	p21.2	37129026-37129048	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
395	HPV16	L2	4970-5004	6	p21.2	36878615-36878572	C6orf89	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
396	HPV16	L2	5001-5028	6	p21.2	37135218-37135244	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
397	HPV16	L2	4970-5109	6	p21.2	36878593-36878572	C6orf89	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
398	HPV16	L2	5255-5278	6	p22.1	37164521-37164552	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
399	HPV16	L2	5275-5314	9	q22.33	100662726-100662696	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
400	HPV16	L1	5970-5998	9	q22.33	100702536-100702506	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
401	HPV16	L1	6276-6295	6	p22.3	37144190-37144215	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
402	HPV16	L1	6410-6440	6	p21.2	36904431-36904461	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
403	HPV16	L1	6589-6627	2	q23.3	151992545-151992576	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
404	HPV16	L1	6636-6660	3	p12.2	81834929-81834959	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
405	HPV16	LCR	7438-7469	9	q22.33	100704916-100704890	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
406	HPV16	LCR	7438-7473	9	q22.33	100704916-100704890	HEMGN	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
407	HPV16	LCR	7606-7616	9	q22.33	100638320-100638345	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
408	HPV16	LCR	7591-7656	3	p12.2	82041238-82041264	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
409	HPV16	LCR	7591-7656	3	p12.2	82041260-82041282	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
410	HPV16	LCR	7814-7837	3	p12.2	82041260-82041282	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
411	HPV16	LCR	7814-7904	3	p12.2	82041270-82041282	-	-	UPCI-SCC090	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
412	HPV16	E1	1573-1599	20	q13.12	45660419-45660393	EYA2	-	HMS001	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
413	HPV16	E1	1685-1703	20	q13.12	45660938-45660912	EYA2	-	HMS001	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
414	HPV16	L1	6690-6712	20	q13.12	45660938-45660912	EYA2	-	HMS001	Cell line	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
415	HPV16	E6	505-531	11	q13.4	71162944-71162968	-	-	Tumor B	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
416	HPV16	E7	552-580	8	p11.23	37346181-37346204	LOC100507420	-	Tumor B	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
417	HPV16	E6	189-206	5	q11.2	56834681-56834712	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
418	HPV16	E6	351-382	5	q11.2	58777461-58777490	PDE4D	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
419	HPV16	E6	379-404	5	q11.2	58795217-58795246	PDE4D	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
420	HPV16	E6	379-420	5	q11.2	58795213-58795246	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
421	HPV16	E1	2475-2501	5	q11.2	56757184-56757210	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
422	HPV16	E1	2502-2523	5	q11.2	56757184-56757210	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
423	HPV16	E2:E4	3464-3496	5	q11.2	58773704-58773731	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
424	HPV16	L2	4225-4255	5	q11.2	56830246-56830223	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
425	HPV16	L2	4364-4393	5	q11.2	56741700-56741670	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
426	HPV16	L1	6775-6803	5	q11.2	56771953-56771928	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
427	HPV16	LCR	7390-7421	5	q11.2	56751290-56751263	-	-	Tumor A	Fresh-frozen HNSCC samples	HNSCC	FISH, WGS, RNA-seq, qPCR	24201445
428	HPV16	E6	70	9	q31.2	111259747	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
429	HPV16	E7	559	9	q31.2	111241132	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
430	HPV16	E1	903	9	q31.2	111237008	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
431	HPV16	E2	2769	9	q31.3	111541176	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
432	HPV16	E6	106	9	q31.2	110495875	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
433	HPV16	E7	565	9	q31.2	110497920	ACTL7B	-	SSC	239	HNSCC	RNA-seq	23740984
434	HPV16	E7	812	15	q26.1	90358960	ANPEP	-	SSC	239	HNSCC	RNA-seq	23740984
435	HPV16	E1	978	15	q26.1	90359954	ANPEP	-	SSC	239	HNSCC	RNA-seq	23740984
436	HPV16	E7	649	15	q26.1	90350002	ANPEP	-	SSC	239	HNSCC	RNA-seq	23740984
437	HPV16	E4	3355	15	q26.1	90333738	ANPEP	-	SSC	239	HNSCC	RNA-seq	23740984
438	HPV16	E7	561	9	p24.1	5462885	CD274	-	SSC	239	HNSCC	RNA-seq	23740984
439	HPV16	L1	6758	9	p24.1	5464598	CD274	-	SSC	239	HNSCC	RNA-seq	23740984
440	HPV16	E6	43	9	q34.11	131856423	CRAT	-	SSC	239	HNSCC	RNA-seq	23740984
441	HPV16	E1	2249	9	q34.11	131856542	CRAT	-	SSC	239	HNSCC	RNA-seq	23740984
442	HPV16	E7	670	9	q34.11	131857745	CRAT	-	SSC	239	HNSCC	RNA-seq	23740984
443	HPV16	E7	663	18	q21.1	45664322	CTIF, ZBTB7C	-	SSC	239	HNSCC	RNA-seq	23740984
444	HPV16	E1	1227	18	q21.1	45664232	CTIF, ZBTB7C	-	SSC	239	HNSCC	RNA-seq	23740984
445	HPV16	L1	5573	21	q22.2	40186953	ETS2	-	SSC	239	HNSCC	RNA-seq	23740984
446	HPV16	E6	75	21	q22.2	40191504	ETS2	-	SSC	239	HNSCC	RNA-seq	23740984
447	HPV16	E7	561	21	q22.2	40191445	ETS2	-	SSC	239	HNSCC	RNA-seq	23740984
448	HPV16	E4	3385	21	q22.2	40193588	ETS2	-	SSC	239	HNSCC	RNA-seq	23740984
449	HPV16	E1	2352	21	q22.2	40190767	ETS2	-	SSC	239	HNSCC	RNA-seq	23740984
450	HPV16	E6	407	16	p13.3	1612024	IFT140	-	SSC	239	HNSCC	RNA-seq	23740984
451	HPV16	E7	561	16	p13.3	1612023	IFT140	-	SSC	239	HNSCC	RNA-seq	23740984
452	HPV16	E1	2206	16	p13.3	1612004	IFT140	-	SSC	239	HNSCC	RNA-seq	23740984
453	HPV16	E6	60	13	q22.1	73910872	KLF12	-	SSC	239	HNSCC	RNA-seq	23740984
454	HPV16	E7	570	13	q22.1	73952914	KLF12	-	SSC	239	HNSCC	RNA-seq	23740984
455	HPV16	E1	944	13	q22.1	73910982	KLF12	-	SSC	239	HNSCC	RNA-seq	23740984
456	HPV16	E6	447	13	q22.1	73620072	KLF5	-	SSC	239	HNSCC	RNA-seq	23740984
457	HPV16	E6	119	21	q22.3	43089331	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
458	HPV16	E7	620	21	q22.3	43089341	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
459	HPV16	E1	889	21	q22.3	43084796	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
460	HPV16	E2	3655	21	q22.3	43087464	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
461	HPV16	E4	3355	21	q22.3	43090560	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
462	HPV16	L2	4262	21	q22.3	43059265	LINC00111	-	SSC	239	HNSCC	RNA-seq	23740984
463	HPV16	E6	115	5	q14.3	84616300	NBPF22P	-	SSC	239	HNSCC	RNA-seq	23740984
464	HPV16	E7	567	5	q14.3	84624716	NBPF22P	-	SSC	239	HNSCC	RNA-seq	23740984
465	HPV16	E1	2056	5	q14.3	84619865	NBPF22P	-	SSC	239	HNSCC	RNA-seq	23740984
466	HPV16	E4	3355	5	q14.3	84629561	NBPF22P	-	SSC	239	HNSCC	RNA-seq	23740984
467	HPV16	E6	106	19	p13.2	9113164	OR1M1	-	SSC	239	HNSCC	RNA-seq	23740984
468	HPV16	E7	567	19	p13.2	9113071	OR1M1	-	SSC	239	HNSCC	RNA-seq	23740984
469	HPV16	E6	73	14	q24.1	68758607	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
470	HPV16	E1	858	14	q24.1	68699906	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
471	HPV16	E2	3625	14	q24.1	68741641	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
472	HPV16	E5	3855	14	q24.1	68683627	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
473	HPV16	E7	565	14	q24.1	68704019	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
474	HPV16	E4	3434	14	q24.1	68741498	RAD51B	-	SSC	239	HNSCC	RNA-seq	23740984
475	HPV16	E1	903	18	q21.33	61317170	SERPINB3	-	SSC	239	HNSCC	RNA-seq	23740984
476	HPV16	L1	5701	18	q21.33	61317182	SERPINB3	-	SSC	239	HNSCC	RNA-seq	23740984
477	HPV16	E6	130	18	q21.33	61322624	SERPINB3	-	SSC	239	HNSCC	RNA-seq	23740984
478	HPV16	E7	561	18	q21.33	61322588	SERPINB3	-	SSC	239	HNSCC	RNA-seq	23740984
479	HPV16	E4	3355	1	p31.3	67220366	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
480	HPV16	E7	568	1	p31.3	67236076	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
481	HPV16	E2	3717	1	p31.3	67229043	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
482	HPV16	E5	3853	1	p31.3	67229161	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
483	HPV16	E1	2567	1	p31.3	67229895	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
484	HPV16	E6	124	1	p31.3	67239538	TCTEX1D1	-	SSC	239	HNSCC	RNA-seq	23740984
485	HPV16	E6	106	1	q25.1	173176246	TNFSF4	-	SSC	239	HNSCC	RNA-seq	23740984
486	HPV16	E7	577	1	q25.1	173176043	TNFSF4	-	SSC	239	HNSCC	RNA-seq	23740984
487	HPV16	E6	117	3	q28	189226255	TP63	-	SSC	239	HNSCC	RNA-seq	23740984
488	HPV16	E7	578	3	q28	189239853	TP63	-	SSC	239	HNSCC	RNA-seq	23740984
489	HPV16	E6	139	18	q21.1	45567460	ZBTB7C	-	SSC	239	HNSCC	RNA-seq	23740984
490	HPV16	E7	567	18	q21.1	45567416	ZBTB7C	-	SSC	239	HNSCC	RNA-seq	23740984
491	HPV16	E1	2126	7	q31.32	-	FAM3C	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
492	HPV16	E2	3723	3	p26.1	-	EDEM1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
493	HPV16	E2/E4	3611	1	q24.3	-	MYOC	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
494	HPV16	E1	2432	11	q13.4	-	P2RY2	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
495	HPV16	L2	5112	16	q23.1	-	KARS	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
496	HPV16	L2	5127	13	q34	-	ATP11A	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
497	HPV16	L2	4468	22	q13.1	-	NPTXR	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
498	HPV16	L2	5128	5	q13.3	-	HMGCR	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
499	HPV16	E1	1024	11	q13.1	-	BC038767	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
500	HPV16	E1	1109	-	-	-	-	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
501	HPV16	L2	4340	3	q29	-	MUC4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
502	HPV16	L2	4336	6	q21	-	FIG4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
503	HPV16	L1	6014	10	q26.11	-	RGS10	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
504	HPV16	L2	4421	4	q23	-	BX647987	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
505	HPV16	L2	4507	12	q24.33	-	SFRS8	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
506	HPV16	L1	6188	12	q24.23	-	SRRM4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
507	HPV16	L2	4612	8	p21.3	-	PEBP4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
508	HPV16	L2	5107	14	q12	-	SCFD1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
509	HPV16	L2	5107	2	q21.2	-	ARHGEF4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
510	HPV16	L1	6188	2	p25,1	-	NOL10	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
511	HPV16	E1	2084	4	p16.3	-	WHSC1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
512	HPV16	E2:E4	3462	6	p22.3	-	DEK	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
513	HPV16	E2:E4	3462	1	q25.1	-	RFWD2	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
514	HPV16	L2	4264	8	p11.1	-	DQ596563	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
515	HPV16	L1	6189	1	p31.3	-	SGIP1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
516	HPV16	E1	1954	14	q32.2	-	BCL11B	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
517	HPV16	L1	5742	3	q13.32	-	EU250752	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
518	HPV16	L2	4822	14	q32.2	-	BCL11B	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
519	HPV16	L2	5107	14	q32.12	-	SLC24A4	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
520	HPV16	L2	5103	5	q35.3	-	COL23A1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
521	HPV16	L1	6188	3	p25.3	-	HRH1	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
522	HPV16	L2	5107	17	p13.1	-	KDM6B	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
523	HPV16	E2:E4	3381	10	q26.11	-	PDZD8	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
524	HPV16	E2	3789	12	p11.21	-	PKP2	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
525	HPV16	E6	557	1	q21.2	-	LOC645166	-	CC specimens, Cell Lines	46	SCC	DIPS	23290390
526	HPV16	L2	5107	15	q25.2	-	MEX3B	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
527	HPV16	L1	6189	17	q21.32	-	B4GALNT2	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
528	HPV16	L2	5112	19	q13.11	-	AK097493	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
529	HPV16	L2	5112	9	q21.31	-	TLE4	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
530	HPV16	L2	5127	4	q13.2	-	TMPRSS11B	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
531	HPV16	E6	274	3	q24.2	-	LOC152024	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
532	HPV16	L2	4467	19	p13.3	-	STK11	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
533	HPV16	E2	2913	8	q24.21	-	MYC	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
534	HPV16	E2	3126	8	q24.21	-	MYC	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
535	HPV16	E2:E4	3461	7	p21.1	-	MACC1	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
536	HPV16	L2	5128	1	p13.2	-	KCND3	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
537	HPV16	L2	5107	X	q23	-	SLC6A14	-	CC specimens, Cell Lines	46	HSIL	DIPS	23290390
538	HPV16	L2	5105	X	p21.3	-	IL1RAPL1	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
539	HPV16	L2	5112	5	p13.3	-	RNASEN	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
540	HPV16	L2	5107	17	q23.2	-	MARCH10	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
541	HPV16	L1	6566	9	q34.3	-	PAEP	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
542	HPV16	L1	6188	5	p15.1	-	FBXL7	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
543	HPV16	L1	6188	X	q21.1	-	TBX22	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
544	HPV16	E1	1115	11	q25	-	SNX19	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
545	HPV16	L2	5127	13	q34	-	ATP11A	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
546	HPV16	L1	6190	14	q24.2	-	DPF3	-	CC specimens, Cell Lines	46	LSIL	DIPS	23290390
547	HPV16	E1	986	20	p11.21	-	AK090900	-	CC specimens, Cell Lines	46	BCC	DIPS	23290390
548	HPV16	L2	4467	11	p15.5	-	AL137655	-	CC specimens, Cell Lines	46	BCC	DIPS	23290390
549	HPV16	L2	4468	7	p12.3	-	ABCA13	-	CC specimens, Cell Lines	46	BCC	DIPS	23290390
550	HPV16	L2	5106	X	q11.1	-	ZXDA	-	CC specimens, Cell Lines	46	BCC	DIPS	23290390
551	HPV16	E2	3157	X	q27.3	-	SLITRK2	-	CC specimens, Cell Lines	46	CaSki	DIPS	23290390
552	HPV16	E2:E4	3385	13	q22.1	-	KLF5	-	CC specimens, Cell Lines	46	SiHa	DIPS	23290390
553	HPV16	E2	3133	13	q22.1	-	KLF12	-	CC specimens, Cell Lines	46	SiHa	DIPS	23290390
554	HPV16	L2	5112	6	p21.31	-	SLC26A8	-	CC specimens, Cell Lines	46	SiHa	DIPS	23290390
555	HPV16	L1	6189	3	q25.2	-	P2RY1	-	CC specimens, Cell Lines	46	SiHa	DIPS	23290390
556	HPV16	E1	-	4	q28	-	-	-	Biopsy specimens of Bowen's disease (BD) and invasive SCC	1	Multifocal vulvar Bowen's disease	PCR, APOT assay	20055874
557	HPV16	E1	-	11	q12	-	-	-	Biopsy specimens of Bowen's disease (BD) and invasive SCC	1	Multifocal vulvar Bowen's disease	PCR, APOT assay	20055874
558	HPV16	E1	-	3	q25	-	-	-	Biopsy specimens of Bowen's disease (BD) and invasive SCC	1	Multifocal vulvar Bowen's disease	PCR, APOT assay	20055874
559	HPV16	E1	-	8	q24	-	Myc	-	Biopsy specimens of Bowen's disease (BD) and invasive SCC	1	Vaginal invasive SCC	PCR, APOT assay	20055874
560	HPV16	-	-	1	p36.12	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
561	HPV16	-	-	1	p36.23	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
562	HPV16	-	-	1	p36.23	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
563	HPV16	-	-	1	p36.23	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
564	HPV16	-	-	1	p36.33	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
565	HPV16	-	-	1	p36.33	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
566	HPV16	-	-	1	p36.33	-	-	FRA1A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
567	HPV16	-	-	1	q42.13	-	ABCB10	FRA1H	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
568	HPV16	-	-	3	q23	-	SLC25A36	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
569	HPV16	-	-	3	q23	-	SLC25A36	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
570	HPV16	-	-	20	q11.21	-	COX4I2	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
571	HPV16	-	-	3	q26.2	-	MECOM	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
572	HPV16	-	-	3	q26.31	-	-	FRA3C	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
573	HPV16	-	-	3	q26.33	-	SOX2	FRA3C	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
574	HPV16	-	-	3	q26.33	-	-	FRA3C	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
575	HPV16	-	-	3	q28	-	LEPREL1	FRA3C	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
576	HPV16	-	-	3	q28	-	TP63	FRA3C	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
577	HPV16	-	-	4	q13.3	-	IL8	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
578	HPV16	-	-	4	q21.22	-	HNRPDL	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
579	HPV16	-	-	6	q22.31	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
580	HPV16	-	-	6	q22.31	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	AC	APOT assay	22815898
581	HPV16	-	-	6	q23.3	-	PDE7B	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
582	HPV16	-	-	6	q23.3	-	MAP3K5	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
583	HPV16	-	-	7	q11.21	-	TYW1	FRA7J	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
584	HPV16	-	-	8	p11.21	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
585	HPV16	-	-	8	p11.21	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
586	HPV16	-	-	8	q24.21	-	MYC/PVT	FRA8E	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
587	HPV16	-	-	9	q22.32	-	C9orf3	FRA9D	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
588	HPV16	-	-	9	q22.32	-	C9orf3	FRA9D	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
589	HPV16	-	-	9	q34.11	-	SLC25A25	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
590	HPV16	-	-	10	q23.31	-	PTEN	FRA10A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
591	HPV16	-	-	11	q13.1	-	DRAP1	FRA11H	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
592	HPV16	-	-	11	q13.1	-	DRAP1	FRA11H	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
593	HPV16	-	-	11	q14.3	-	-	FRA11F	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
594	HPV16	-	-	13	q	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
595	HPV16	-	-	13	q12.3	-	POMP	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
596	HPV16	-	-	13	q22.1	-	-	FRA13B	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
597	HPV16	-	-	13	q22.1	-	KLF5	FRA13B	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
598	HPV16	-	-	17	q12	-	HNF1B	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
599	HPV16	-	-	17	q23.1	-	VMP1	FRA17B	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
600	HPV16	-	-	18	q11.2	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
601	HPV16	-	-	19	p13.3	-	-	FRA19B	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
602	HPV16	-	-	19	q13.43	-	-	FRA19A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
603	HPV16	-	-	20	q11.21	-	COX4I2	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
604	HPV16	-	-	20	q11.21	-	COX4I2	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
605	HPV16	-	-	20	q13.13	-	-	-	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
606	HPV16	-	-	1	p36.1	16200000-28000000	-	FRA1A	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
607	HPV16	-	-	1	q21.2	147000000-150300000	GOLPH3L	FRA1F	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
608	HPV16	-	-	1	q43	236600000-243700000	NID1	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
609	HPV16	-	-	1	q32.1	198700000-207200000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
610	HPV16	-	-	2	q22.3	144100000-148700000	-	FRA2K	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
611	HPV16	-	-	3	q28	187900000-192300000	TP73, FAM79B	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
612	HPV16	-	-	5	q32	144500000-149800000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
613	HPV16	-	-	5	p14.1	24600000-28900000	CDH10, CDH9, LINC01021, LOC340107	FRA5E	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
614	HPV16	-	-	6	p12.2	51800000-52900000	PKHD1	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
615	HPV16	-	-	10	q21.3	64500000-70600000	-	FRA10C	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
616	HPV16	-	-	11	p13	31000000-36400000	MPPED2	FRA11E	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
617	HPV16	-	-	12	q22	92600000-96200000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
618	HPV16	-	-	14	q32.2	96300000-101400000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
619	HPV16	-	-	15	q26.3	98500000-102531392	LRRC28	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
620	HPV16	-	-	15	q23	67500000-72700000	THSD4	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
621	HPV16	-	-	17	q23.1	57600000-58300000	TUBD1	FRA17B	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
622	HPV16	-	-	17	q12	31800000-38100000	CCR7	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
623	HPV16	-	-	17	q21	38100000-50200000	BRCA1	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
624	HPV16	-	-	17	q11.2	25800000-31800000	PHF12	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
625	HPV16	-	-	18	q21.31	53800000-56200000	ATP8B1	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
626	HPV16	-	-	20	q13.13	46400000-49800000	SLC9A8	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
627	HPV16	-	-	22	q13.1-q13.2	37600000-44200000	-	FRA22A	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
628	HPV16	L2	5087-5053	1	q44	244169110-244169844	LOC339529	FRA1I	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
629	HPV16	E1	2468-2631	2	p24.1	20812529	MYCN	FRA2C	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
630	HPV16	L2:L1	5540-5791	3	q28	191094700-191094127	LPP, CCDC50	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
631	HPV16	E2:E4	3090-3493	3	q24	144727357	GMPS	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
632	HPV16	E2	3690-3641	4	q13.3	74699517-74699623	-	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
633	HPV16	E1	1733-1760	4	q35.2	144727102-144727357	DUX4	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
634	HPV16	E1	1745-2282	4	q31.21	143447867	INPP4B, FBXW7	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
635	HPV16	E2:E4	3103-3750	4	q21.23	87202219	MAPK10, MLLT2	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
636	HPV16	E7:E1	773-893	5	q11.2	52701417	-	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	APOT assay	18922896
637	HPV16	E1	1737-1757	8	q24.21	128476710	CASC8, MYC	FRA8C, FRA8D	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
638	HPV16	E1	1673-1591	8	q24.21	128476292	CASC8, MYC	FRA8C, FRA8D	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
639	HPV16	E2:E4	3598-3092	8	q24.21	128476681	CASC8, MYC	FRA8C, FRA8D	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
640	HPV16	E1	1613-1587	8	q24.21	128476363	CASC8, MYC	FRA8C, FRA8D	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
641	HPV16	E2	3230-2977	8	p11.21	41625274-41625232	MYST3, NKX6-3, ANK1	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
642	HPV16	E7	630-799	9	p24.3	179536-179944	JAK2	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	APOT assay	18922896
643	HPV16	E2:E4	3425-2978	10	q22.1	73710593	MYST4, ANAPC16	FRA10D	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
644	HPV16	E2	3024-3118	12	q14.3	64283367	SRGAP1, MDM2, CDK4	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
645	HPV16	L1	5724-5704	12	q14.3	64286157-64286652	SRGAP1, MDM2, CDK4	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
646	HPV16	L2	5082-4936	16	p13.3	4575086	CDIP1, TSC2, CIITA	FRA16A	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
647	HPV16	E1	2678-2415	17	q12	33355996	RFFL, Nf1, RARA, RAD51L3-RFFL	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
648	HPV16	L2	4841-5126	17	q12	34526366	Nf1, RARA	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
649	HPV16	E2	2989-2964	18	q21.2	52165073-52165011	MALT1	FRA19A	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
650	HPV16	E4	3387-3516	19	q13.31	48486880	BSPH1, BCL3, ERCC2, AKT2	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	APOT assay	18922896
651	HPV16	E4	3409-3550	21	q22.1	29577377	LOC101927973	-	Cervical cell and sample	W12 cells	CC, LSIL to SCC	APOT assay	18922896
652	HPV16	E7:E1	854-1079	22	q12.1	26738021	SEZ6L, CHEK2, EWSR1	FRA22B	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
653	HPV16	E2	3025-3195	X	p22.32	4873720-4873890	-	FRAXB	Cervical cell and sample	W12 cells	CC, LSIL to SCC	RS-PCR	18922896
654	HPV16	-	-	1	p36.11	-	C1orf201	FRA1A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
655	HPV16	-	-	1	p36.11	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
656	HPV16	-	-	2	p13.1	-	-	FRA2E	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
657	HPV16	-	-	2	p24.3	-	-	FRA2C	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
658	HPV16	-	-	4	q23	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
659	HPV16	-	-	8	q24.21	-	-	FRA8C	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
660	HPV16	-	-	8	q12.1	-	FAM110B	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
661	HPV16	-	-	8	q12.1	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
662	HPV16	-	-	9	p24.1	-	KIAA1432	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
663	HPV16	-	-	9	p24.1	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
664	HPV16	-	-	13	q22.1	-	-	FRA13B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
665	HPV16	-	-	17	q21.2	-	EIF1	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
666	HPV16	-	-	19	p13.11	-	ZNF506	FRA19B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
667	HPV16	-	-	19	q13.2	-	CEACAM6	FRA19A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
668	HPV16	-	-	20	p11.21	-	-	FRA20A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
669	HPV16	-	-	8	q24.21	-	MYC	-	Cell lines	9	SCC	FISH, DIPS, APOT assay	16682952
670	HPV16	-	-	8	q24.21	-	MYC	-	Cell lines	9	AC	FISH, DIPS, APOT assay	16682952
671	HPV16	-	-	1	q32.2	-	CAMK1G	-	Cell lines	9	AC	FISH, DIPS, APOT assay	16682952
672	HPV16	-	-	20	p11.2	-	-	FRA20A	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
673	HPV16	-	-	11	q13	-	-	FRA11A, FRA11H	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
674	HPV16	-	-	12	p11.2	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
675	HPV16	-	-	8	q13	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
676	HPV16	-	-	2	q12	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
677	HPV16	-	-	2	p23	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
678	HPV16	-	-	8	q24.3	-	-	FRA8D	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
679	HPV16	-	-	19	p13.1	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
680	HPV16	-	-	11	q23	-	-	FRA11G, FRA11B	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
681	HPV16	-	-	11	q23-q25	-	-	FRA11G, FRA11B	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
682	HPV16	-	-	19	q13.3	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
683	HPV16	-	-	9	q34	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
684	HPV16	-	-	3	q22	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
685	HPV16	-	-	11	q13-q25	-	-	FRA11A, FRA11F, FRA11G, FRA11H, FRA11B	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
686	HPV16	-	-	14	q11.2	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
687	HPV16	-	-	10	q26	-	-	FRA10F	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
688	HPV16	-	-	12	q12	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	CC	FISH, RS-PCR	15146560
689	HPV16	-	-	6	p22.2	-	-	FRA6C	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
690	HPV16	-	-	12	p12	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
691	HPV16	-	-	6	p24-p25	-	-	FRA6B	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
692	HPV16	-	-	13	q21	-	-	FRA13C, FRA13B	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
693	HPV16	-	-	16	p12.3	-	UMOD	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
694	HPV16	-	-	6	p21.2	-	PIM1	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
695	HPV16	-	-	6	p21.31	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
696	HPV16	-	-	3	q21-q25	-	-	FRA3D	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
697	HPV16	-	-	3	q21	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
698	HPV16	-	-	9	q34	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
699	HPV16	-	-	6	p12	-	-	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
700	HPV16	-	-	9	q31.3	-	HEMGN	-	Tongue tumor, Cervical cell lines	2 cell lines	HNSCC	FISH, RS-PCR	15146560
701	HPV16	E5	3959	3	q26.33	-	SOX2	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
702	HPV16	E1	2135	16	q24	-	CDH13	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
703	HPV16	E1	2131	2	q22	-	ZEB2	FRA2K	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
704	HPV16	E1	1654	3	p21.32	-	MAP4	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
705	HPV16	E1	1427	2	q21	-	LRP1B	FRA2F	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
706	HPV16	E2/E4	3503	2	q34	-	ERBB4	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
707	HPV16	E1	2339	3	q27	-	-	FRA3C	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
708	HPV16	E1	1654	7	p22	-	DGKB	FRA7B	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
709	HPV16	E1	1464	4	q21.21	-	BMP2K	-	Cancer Biopsy samples	21	Vaginal carcinoma	DIPS, APOT assay	12813471
710	HPV16	E1	1256	X	p22	-	-	FRAXB	Cancer Biopsy samples	21	Vaginal carcinoma	DIPS, APOT assay	12813471
711	HPV16	E1	1855	6	p24	-	RANBP9	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
712	HPV16	E2	3031	9	p22	-	ZDHHC21	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
713	HPV16	-	-	5	p15.3	-	-	FRA5E	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
714	HPV16	-	-	3	q26	-	SI	-	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
715	HPV16	-	-	13	q22.2	-	-	FRA13C	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
716	HPV16	-	-	17	q23.2	-	-	FRA17B	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
717	HPV16	-	-	15	q15	-	-	FRA15A	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
718	HPV16	-	-	11	p15.5	-	MUC5B	FRA11C	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
719	HPV16	-	-	3	p14.1	-	-	FRA3B	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
720	HPV16	-	-	1	q41	-	-	FRA1H	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
721	HPV16	-	-	12	q13	-	-	FRA12A	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
722	HPV16	-	-	20	p12.1	-	-	FRA20B	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
723	HPV16	-	-	5	q31.3	-	-	FRA5C	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
724	HPV16	-	-	5	q35	-	-	FRA5G	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
725	HPV16	-	-	5	q35	-	KCNIP1	FRA5G	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
726	HPV16	-	-	12	q21.31	-	MYF5	FRA12B	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
727	HPV16	-	-	9	q34.3	-	NOTCH1	FRA9E	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
728	HPV16	-	-	8	q21.3	-	RIPK2	FRA8B	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
729	HPV16	-	-	6	q21	-	-	FRA6F	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
730	HPV16	-	-	10	q22	-	-	FRA10D	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
731	HPV16	-	-	9	p24.1	-	-	-	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
732	HPV16	-	-	12	q23.1	-	ELK3	-	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
733	HPV16	-	-	14	q13.3	-	ODC1	-	Cervical tumor specimens	26	CC	RS-PCR, FISH	12606949
734	HPV16	-	-	1	p36	-	WASF2	FRA1A	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
735	HPV16	-	-	1	q21	-	RPS27	FRA1F	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
736	HPV16	-	-	1	q32	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
737	HPV16	-	-	2	q23	-	-	FRA2K	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
738	HPV16	-	-	2	p24	-	-	FRA2C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
739	HPV16	-	-	2	q31	-	-	FRA2G	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
740	HPV16	-	-	2	q24	-	NR4A2	FRA2K	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
741	HPV16	-	-	2	q33	-	-	FRA2I	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
742	HPV16	-	-	2	q32	-	GLS	FRA2H	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
743	HPV16	-	-	3	q28	-	TP63	FRA3C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vulvar carcinoma, VIN X	RT-PCR	11821954
744	HPV16	-	-	3	q28	-	-	FRA3C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vulvar carcinoma, VIN 3	RT-PCR	11821954
745	HPV16	-	-	3	q21	-	-	FRA3F	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
746	HPV16	-	-	4	q31	-	-	FRA4C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vulvar carcinoma, VIN 2	RT-PCR	11821954
747	HPV16	-	-	4	p16	-	-	FRA4A	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
748	HPV16	-	-	4	q21	-	PTPN13	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
749	HPV16	-	-	5	q31	-	KLHL3	FRA5C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
750	HPV16	-	-	5	q35	-	-	FRA5G	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
751	HPV16	-	-	6	q25	-	TCP1	FRA6E	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vulvar carcinoma, VIN 3	RT-PCR	11821954
752	HPV16	-	-	6	q21	-	-	FRA6F	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
753	HPV16	-	-	7	q21	-	-	FRA7E	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
754	HPV16	-	-	8	q24	-	-	FRA8D, FRA8E, FRA8C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
755	HPV16	-	-	8	p23	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
756	HPV16	-	-	9	q22	-	FANCC	FRA9D	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
757	HPV16	-	-	9	q34	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
758	HPV16	-	-	9	p13	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
759	HPV16	-	-	10	p15	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
760	HPV16	-	-	10	q22	-	-	FRA10D	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
761	HPV16	-	-	10	q26	-	-	FRA10F	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
762	HPV16	-	-	10	q23	-	MYOF	FRA10A	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
763	HPV16	-	-	13	q22	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
764	HPV16	-	-	13	q21	-	-	FRA13C, FRA13B	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	SiHa	RT-PCR	11821954
765	HPV16	-	-	13	q21	-	-	FRA13C, FRA13B	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
766	HPV16	-	-	13	q21.2	-	-	FRA13C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
767	HPV16	-	-	13	q14	-	KPNA3	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vulvar carcinoma, VIN 3	RT-PCR	11821954
768	HPV16	-	-	14	q24.1	-	-	FRA14C	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
769	HPV16	-	-	15	q15	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
770	HPV16	-	-	16	q12	-	AFP	FRA16B	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
771	HPV16	-	-	17	q12	-	MED24	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
772	HPV16	-	-	19	q13	-	CEACAM5	FRA19A	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
773	HPV16	-	-	20	p11	-	-	FRA20A	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
774	HPV16	-	-	20	p12	-	-	FRA20B	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
775	HPV16	-	-	21	q22	-	-	-	Clinical specimens, Cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vaginal carcinoma, VaIN 2	RT-PCR	11821954
776	HPV16	-	-	10	p15.1	-	-	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
777	HPV16	-	-	19	q13.42	-	-	FRA19A	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
778	HPV16	-	-	5	q35	-	-	FRA5C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
779	HPV16	-	-	8	q21.3	-	-	FRA8B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
780	HPV16	-	-	3	p14.1	-	FHIT	FRA3B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
781	HPV16	-	-	12	q21.31	-	-	FRA12B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
782	HPV16	-	-	5	p15.3	-	-	FRA5E	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
783	HPV16	-	-	12	q13	-	-	FRA12B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
784	HPV16	-	-	11	p15.5	-	-	FRA11C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
785	HPV16	-	-	10	q22	-	-	FRA10D	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
786	HPV16	-	-	13	q22.2	-	-	FRA13C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
787	HPV16	-	-	5	q31.1	-	-	FRA5C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
788	HPV16	-	-	15	q15	-	-	FRA15A	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
789	HPV16	-	-	9	p24.1	-	-	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
790	HPV16	-	-	1	q41	-	-	FRA1H	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
791	HPV16	-	-	17	q23.2	-	-	FRA17B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
792	HPV16	-	-	6	q21	-	-	FRA6F	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
793	HPV16	-	-	5	q33.1	-	-	FRA5C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
794	HPV16	-	-	2	q22.3	-	-	FRA2F	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
795	HPV16	-	-	11	q14.3	-	-	FRA11F	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
796	HPV16	-	-	5	p15	-	TERT	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
797	HPV16	-	-	20	p12.1	-	-	FRA20B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
798	HPV16	-	-	4	q31.21	-	-	FRA4C	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
799	HPV16	-	-	20	q12.13	-	-	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
800	HPV16	-	-	9	p23-p24.3	-	-	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
801	HPV16	-	-	11	q12.13	-	-	FRA11H	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
802	HPV16	-	-	9	q34.3	-	-	FRA9E	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
803	HPV16	-	-	12	q23.1	-	-	FRA12E	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
804	HPV16	-	-	4	q13.3	-	-	FRA4B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
805	HPV16	-	-	17	q21.2	-	-	FRA17B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
806	HPV16	-	-	2	q24.1	-	-	-	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
807	HPV16	-	-	17	q25.3	-	-	FRA17B	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
808	HPV16	-	-	2	q24.1	-	-	FRA2G	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
809	HPV16	-	-	1	q21.1	-	-	FRA1F	Tumor sample	60 HPV16+	CC	RS-PCR, Western blot	15771901
810	HPV16	-	-	1	q25.3	-	XPR1	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
811	HPV16	-	-	1	q25.3	-	XPR1	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
812	HPV16	-	-	1	p31.1	-	TTLL7	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
813	HPV16	-	-	3	q28	-	-	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
814	HPV16	-	-	6	p25.2	-	SLC22A23	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
815	HPV16	-	-	6	p25.2	-	SLC22A23	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
816	HPV16	-	-	11	p13	-	EHF	FRA11E	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
817	HPV16	-	-	11	p13	-	EHF	FRA11E	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
818	HPV16	-	-	13	q22	-	-	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
819	HPV16	-	-	18	q21.33	-	SERPINB2	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
820	HPV16	-	-	18	q21.33	-	SERPINB2	-	Clinical specimens	18 (CIN III), 37 SCC	CC	rliPCR, FISH	11277395
821	HPV16	-	-	16	p13.3	-	TRAP1	-	Penile cancer biopsies	5	Penile carcinoma	PCR	22451136
822	HPV16	-	-	8	q21.3	-	FAM92A1	-	Penile cancer biopsies	5	Penile carcinoma	PCR	22451136
823	HPV16	-	-	20	p12.2	-	JAG1	FRA20B	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
824	HPV16	-	-	20	p12.2	-	JAG1	FRA20B	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
825	HPV16	-	-	3	q28	-	TP63	-	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
826	HPV16	-	-	8	q24.21	-	POU5F1B	-	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
827	HPV16	-	-	9	p23	-	PTPRD/TYRP	-	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
828	HPV16	-	-	19	q13.43	-	ZSCAN5A	-	Clinical specimens	24	Penile carcinoma	rliPCR	18688866
829	HPV16	E1	1248	2	q22	-	-	FRA2K	Clinical tumor sample	-	CC	DIPS-PCR	11279600
830	HPV16	E1	1470	2	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
831	HPV16	E1	1641	16	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
832	HPV16	E1	2156	2	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
833	HPV16	E1	2387	1	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
834	HPV16	E1	1162	14	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
835	HPV16	E1	1547	14	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
836	HPV16	E1	1508	14	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
837	HPV16	E1	1353	17	q22	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
838	HPV16	E1	1857	7	q31	-	-	FRA7G	Clinical tumor sample	-	CC	DIPS-PCR	11279600
839	HPV16	E1	1165	14	q24.3	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
840	HPV16	E1	2000	8	q24.21	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
841	HPV16	E1	1830	10	p15	-	-	-	Clinical tumor sample	-	Vulval carcinoma (VIN III)	DIPS-PCR	11279600
842	HPV16	E1	1054	17	-	-	-	-	Cervical cell line	-	HPKIA	DIPS-PCR	11279600
843	HPV16	E1	1296	3	-	-	-	-	Cervical cell line	-	HPKII	DIPS-PCR	11279600
844	HPV16	-	-	6	p22.3	-	CDKAL1	FRA6C	Cervical tumor specimens	7	CC	RS-PCR, FISH	11085503
845	HPV16	-	-	17	q22	-	MSI2	FRA17B	Cervical tumor specimens	7	CC	RS-PCR, FISH	11085503
846	HPV16	-	-	1	q23.3	-	USP21	FRA1F	Cervical tumor specimens	7	CC	RS-PCR, FISH	11085503
847	HPV16	-	-	3	p14	-	FHIT	FRA3B	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CSCC-7	PCR, FISH	10554043
848	HPV16	-	-	14	q11.1-q32.33	-	-	FRA14C, FRA14B	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CSCC-1	PCR, FISH	10554043
849	HPV16	-	-	8	q24.1	-	myc, POU5F1B	FRA8E, FRA8C	Tumor biopsies	4	CC	Karyotypic analysis and in-situ hybridization	1649348
850	HPV16	-	-	8	q24.1	-	myc, POU5F1B	FRA8E, FRA8C	Tumor biopsies	4	Penile carcinoma	Karyotypic analysis and in-situ hybridization	1649348
851	HPV16	-	-	3	p14.2	-	FHIT	FRA3B	Cervical cancer specimens	4	CC	Southern blot hybridization, Genomic cloning	2153245
852	HPV16	-	-	6	p21.2	-	ZFAND3	-	Cervical cancer specimens	4	CC	Southern blot hybridization, Genomic cloning	2153245
853	HPV16	-	-	2	q33.1	-	ALS2CR11	-	Cervical cancer specimens	4	CC	Southern blot hybridization, Genomic cloning	2153245
854	HPV16	-	-	17	q11.2	-	MYO1D	-	Cervical cancer specimens	4	CC	Southern blot hybridization, Genomic cloning	2153245
855	HPV16	-	-	13	q14-q32	-	-	FRA13D, FRA13C, FRA13B	CC biopsies, Cervical cell lines	-	CC	Southern Blot Analysis, RNA Transfer Blot Analysis	3029760
856	HPV16	-	-	14	q32.3	-	TNFAIP2	-	Clinical tumor sample	1	CC	Southern blot hybridization, Nucleotide sequencing, FISH	11839676
857	HPV16	-	-	13	q22.1	-	KLF12, KLF5	-	Cervical cell line	1	CC (SiHa)	Southern blot hybridization	3039733
858	HPV16	E2/E4	3132-3384	13	q22.1	-	KLF12	-	Cervical cell line	2	CC (SiHa,CaSki)	Southern blot hybridization, Clonning, DNA sequencing	3029430
859	HPV18	E1	929	6	p25.1	4280617-4331314	-	FRA6B	SCC clinical specimens	-	Metastatic CC	PCR, FISH, RNA-seq	24418928
860	HPV18	E2	3274	6	p25.1	4280617-4331314	-	FRA6B	SCC clinical specimens	-	Metastatic CC	PCR, FISH, RNA-seq	24418928
861	HPV18	E2/E4	3535	6	p25.1	4280617-4331314	-	FRA6B	SCC clinical specimens	-	Metastatic CC	PCR, FISH, RNA-seq	24418928
862	HPV18	-	-	10	q23.33	-	-	FRA10A	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
863	HPV18	-	-	11	q23.3	-	ARCN1	FRA11G	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	AC	APOT assay	22815898
864	HPV18	-	-	18	q21.3	-	-	FRA18B	Cervical tumor biopsies, FIGO stage IIIB	185 HPV16/18+, 68 integrated	SCC	APOT assay	22815898
865	HPV18	-	-	1	q41	214500000-224100000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
866	HPV18	-	-	3	q28	187900000-192300000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
867	HPV18	-	-	10	q24.33	104900000-105800000	SH3PXD2A	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
868	HPV18	-	-	7	q36.2	152600000-155100000	RHEB	FRA7I	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
869	HPV18	-	-	12	q22	92600000-96200000	TMCC3	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
870	HPV18	-	-	8	q24.21	127300000-131500000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
871	HPV18	-	-	8	q24.3	139900000-146364022	GPAA1	FRA8D	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
872	HPV18	-	-	7	p22.1	4500000-7300000	FOXK1	FRA7B	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
873	HPV18	-	-	1	q32.2-q41	207200000-224100000	-	-	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
874	HPV18	-	-	10	q25.2	111900000-114900000	-	FRA10B;FRA10E	CC biopsies	121	CC	NM-PCR, APOT assay	19640172
875	HPV18	-	-	1	p34.3	38006232-38006339	SNIP1	-	Tumor sample	115	SCC	RNA-seq	24390348
876	HPV18	-	-	1	q24.3	171076978-171086298	FMO3	FRA1G	Tumor sample	115	Adenosquamous carcinoma	RNA-seq	24390348
877	HPV18	-	-	2	q22.3	146400095-146485051	-	-	Tumor sample	115	AC	RNA-seq	24390348
878	HPV18	-	-	3	q25.2	152881243-152937321	RAP2B	FRA3D	Tumor sample	115	SCC	RNA-seq	24390348
879	HPV18	-	-	3	q25.2	152937087-152937321	-	FRA3D	Tumor sample	115	AC	RNA-seq	24390348
880	HPV18	-	-	3	q25.2	152937098-152937322	-	FRA3D	Tumor sample	115	SCC	RNA-seq	24390348
881	HPV18	-	-	3	q25.2	152937099-152937319	-	FRA3D	Tumor sample	115	SCC	RNA-seq	24390348
882	HPV18	-	-	7	q36.1	148885555-148886074	-	FRA7I	Tumor sample	115	AC	RNA-seq	24390348
883	HPV18	-	-	8	p11.23	37550966-37552221	-	-	Tumor sample	115	SCC	RNA-seq	24390348
884	HPV18	-	-	8	q24.21	128195023-128195511	-	-	Tumor sample	115	Clear cell carcinoma	RNA-seq	24390348
885	HPV18	-	-	8	q24.21	128302012-128314759	LOC727677, CASC21, CASC8	-	Tumor sample	115	Neuroendocrine carcinoma	RNA-seq	24390348
886	HPV18	-	-	8	q24.21	128742967-128806935	MYC, CASC11	-	Tumor sample	115	Neuroendocrine carcinoma	RNA-seq	24390348
887	HPV18	-	-	8	q24.3	144502066-144510443	MAFA	FRA8D	Tumor sample	115	AC	RNA-seq	24390348
888	HPV18	-	-	9	q22.31	94912835-94913715	LINC00475	FRA9D	Tumor sample	115	AC	RNA-seq	24390348
889	HPV18	-	-	9	q22.32	97764551-97823107	C9orf3	-	Tumor sample	115	AC	RNA-seq	24390348
890	HPV18	-	-	9	q34.3	139543325-139562753	EGFL7	-	Tumor sample	115	AC	RNA-seq	24390348
891	HPV18	-	-	12	q22	94976090-95049742	TMCC3	FRA12B	Tumor sample	115	Adenosquamous carcinoma	RNA-seq	24390348
892	HPV18	-	-	14	q21.2	45403759-45499251	KLHL28, FAM179B	-	Tumor sample	115	SCC	RNA-seq	24390348
893	HPV18	-	-	14	q24.1	68592064-68667626	RAD51B	FRA14C	Tumor sample	115	Adenosquamous carcinoma	RNA-seq	24390348
894	HPV18	-	-	17	q21.2	39101544-39132008	KRT39	-	Tumor sample	115	AC	RNA-seq	24390348
895	HPV18	-	-	17	q23.1	57918880-58007502	TUBD1, RPS6KB1	FRA17B	Tumor sample	115	AC	RNA-seq	24390348
896	HPV18	-	-	20	p12.1	15025585-15067827	MACROD2	FRA20B	Tumor sample	115	Adenosquamous carcinoma	RNA-seq	24390348
897	HPV18	-	-	3	q26.32	176741962-176754943	TBL1XR1	-	Tumor sample	115	AC	WGS	24390348
898	HPV18	-	-	8	q24.3	144501850-144502166	-	FRA8D	Tumor sample	115	AC	WGS	24390348
899	HPV18	-	-	14	q21.2	45408708-45499175	KLHL28, FAM179B	-	Tumor sample	115	SCC	WGS	24390348
900	HPV18	-	-	20	p12.1	14954915-14955301	MACROD2	FRA20B	Tumor sample	115	Adenosquamous carcinoma	WGS	24390348
901	HPV18	-	-	2	q34	-	-	FRA2I	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
902	HPV18	-	-	2	q24.2	-	ITGB6	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
903	HPV18	-	-	2	q24.2	-	ITGB6	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
904	HPV18	-	-	2	q22.1	-	LRP1B	FRA2F	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
905	HPV18	-	-	2	p25.1	-	CYS1	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
906	HPV18	-	-	4	q13.3	-	IL8	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
907	HPV18	-	-	4	p15.31	-	KCNIP4	FRA4D	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
908	HPV18	-	-	4	q12	-	-	FRA4B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
909	HPV18	-	-	4	q28.3	-	SLC7A11	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
910	HPV18	-	-	5	q31.3	-	ARHGAP26	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
911	HPV18	-	-	5	q33.1	-	SH3TC2	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
912	HPV18	-	-	6	p25	-	RREB1	FRA6B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
913	HPV18	-	-	6	p25	-	RREB1	FRA6B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
914	HPV18	-	-	6	p22.1	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
915	HPV18	-	-	7	q31.1	-	IMMP2L	FRA7G	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
916	HPV18	-	-	8	q24.21	-	-	FRA8C	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
917	HPV18	-	-	8	q24.21	-	MYC	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
918	HPV18	-	-	8	q21.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
919	HPV18	-	-	10	q24.31	-	NPM3	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
920	HPV18	-	-	12	p11.2	-	SSPN	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
921	HPV18	-	-	13	q22.1	-	KLF5	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
922	HPV18	-	-	14	q11.2	-	HAUS4	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
923	HPV18	-	-	15	q21.1	-	-	FRA15A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
924	HPV18	-	-	15	q25.3	-	AGBL1	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
925	HPV18	-	-	19	q13.11	-	-	FRA19A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
926	HPV18	-	-	20	p12.1	-	FLRT3	FRA20B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
927	HPV18	-	-	X	q25	-	SMARCA1	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
928	HPV18	-	-	X	p22.31	-	-	FRAXB	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
929	HPV18	-	-	13	q22.1	-	KLF12	-	Cell lines	9 Cell lines	AC	FISH, DIPS, APOT assay	16682952
930	HPV18	-	-	15	q21.3	-	DYX1C1	-	Cell lines	9 Cell lines	AC	FISH, DIPS, APOT assay	16682952
931	HPV18	-	-	19	p13.2	-	NFIX	-	Cell lines	9 Cell lines	AC	FISH, DIPS, APOT assay	16682952
932	HPV18	-	-	8	q24.21	-	MYC	-	Cell lines	9 Cell lines	AC	FISH, DIPS, APOT assay	16682952
933	HPV18	-	-	8	q24.21	-	MYC	-	Cell lines	9 Cell lines	AC	FISH, DIPS, APOT assay	16682952
934	HPV18	-	-	7	q31	-	ZNF277	-	Cell lines	9 Cell lines	SCC	FISH, DIPS, APOT assay	16682952
935	HPV18	-	-	14	q24.3	-	-	FRA14C	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
936	HPV18	-	-	14	q24.1	-	-	FRA14C	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
937	HPV18	-	-	9	q22	-	FANCC	FRA9D	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
938	HPV18	-	-	5	p13.2	-	SLC1A3	FRA5E	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
939	HPV18	-	-	8	p21.1	-	EPHX2	-	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
940	HPV18	-	-	1	q31.1	-	-	FRA1K	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
941	HPV18	-	-	5	q15	-	-	FRA5D, FRA5B	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
942	HPV18	-	-	19	p13	-	-	FRA19B	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
943	HPV18	-	-	19	p13	-	PRKACA	FRA19B	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
944	HPV18	-	-	5	p15	-	-	FRA5D	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
945	HPV18	-	-	19	q13	-	CEACAM5	FRA19A	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
946	HPV18	-	-	19	q13	-	-	FRA19A	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
947	HPV18	-	-	2	q22.1	-	LRP1B	FRA2F	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
948	HPV18	-	-	8	q24	-	-	FRA8D, FRA8E, FRA8C	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
949	HPV18	-	-	8	q24	-	-	FRA8D, FRA8E, FRA8C	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
950	HPV18	-	-	8	q24.1	-	-	FRA8E, FRA8C	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
951	HPV18	-	-	8	q24.2	-	-	FRA8C, FRA8D	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
952	HPV18	-	-	3	p14	-	FHIT	FRA3B	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
953	HPV18	-	-	12	q14.3	-	-	FRA12A	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
954	HPV18	-	-	15	q23	-	-	FRA15A	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
955	HPV18	-	-	7	q31	-	-	FRA7G	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
956	HPV18	-	-	1	q32.2	-	CD34	FRA1K	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
957	HPV18	-	-	8	q21.2	-	-	-	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
958	HPV18	-	-	6	q26-q27	-	FAM120B	FRA6E	Tumor sample	32 (Tumor sample), 3 (cell lines)	CC	FISH, RS-PCR	14562053
959	HPV18	E1	1733	9	q34.11	-	LRSAM1	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
960	HPV18	E1	2707	4	p15	-	PCDH7	FRA4D	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
961	HPV18	E1	2241	6	p23	-	C6orf195	FRA6A	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
962	HPV18	E1/E2	2946	8	q24.12	-	DEPTOR	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
963	HPV18	E1	2772	17	q23	-	-	FRA17B	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
964	HPV18	E1	2466	17	q23.1	-	VMP1	FRA17B	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
965	HPV18	E2/E4	3220	1	q43	-	HEATR1	-	Cancer Biopsy samples	21	CC	DIPS, APOT assay	12813471
966	HPV18	-	-	14	q24	-	RNGTT	FRA14C	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
967	HPV18	-	-	14	q24.1	-	-	FRA14C	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
968	HPV18	-	-	9	q22	-	FANCC	FRA9D	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
969	HPV18	-	-	5	p13.2	-	SLC1A3	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
970	HPV18	-	-	8	p21	-	EPHX2	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
971	HPV18	-	-	1	q31	-	-	FRA1K	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
972	HPV18	-	-	5	q15	-	-	FRA5D;FRA5B	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
973	HPV18	-	-	19	p13	-	PRKACA	FRA19B	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
974	HPV18	-	-	5	p15	-	-	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
975	HPV18	-	-	12	q13	-	-	FRA12A	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
976	HPV18	-	-	19	q13	-	CEACAM5	FRA19A	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
977	HPV18	-	-	2	q22.1	-	LRP1B	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
978	HPV18	-	-	8	q24	-	-	FRA8D;FRA8E;FRA8C	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
979	HPV18	-	-	8	q24.2	-	-	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
980	HPV18	-	-	3	p14	-	FHIT	FRA3B	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
981	HPV18	-	-	15	q23	-	-	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
982	HPV18	-	-	7	q31	-	-	FRA7G	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
983	HPV18	-	-	6	q26	-	FAM120B	FRA6E	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
984	HPV18	-	-	1	q32.2	-	CD34	-	Tumor sample and cell lines	75 HPV16+, 34 HPV18+	CC	RS-PCR, LR-PCR, RT-PCR	12802289
985	HPV18	-	-	1	q43	-	CHS1, LYST	FRA1I	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
986	HPV18	-	-	3	q28	-	-	FRA3C	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
987	HPV18	-	-	3	p21	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
988	HPV18	-	-	4	q21	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
989	HPV18	-	-	8	p11.2	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
990	HPV18	-	-	8	q24	-	MYC	FRA8D, FRA8E, FRA8C	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
991	HPV18	-	-	8	q24	-	-	FRA8D, FRA8E, FRA8C	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	HeLa	RT-PCR	11821954
992	HPV18	-	-	8	q21	-	-	FRA8B	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	C4-1	RT-PCR	11821954
993	HPV18	-	-	12	q21	-	-	FRA12B	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
994	HPV18	-	-	14	q13	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
995	HPV18	-	-	15	q12	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	Vaginal carcinoma, VaIN 3	RT-PCR	11821954
996	HPV18	-	-	17	q23	-	-	FRA17B	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
997	HPV18	-	-	21	q21	-	-	-	Clinical specimens, cervical cell lines	50 HPV16+, 14 HPV18+, 5 cell lines	CC	RT-PCR	11821954
998	HPV18	-	-	1	q31	-	-	FRA1L	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
999	HPV18	-	-	2	q33.2	-	-	FRA2I	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1000	HPV18	-	-	2	q33.3	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1001	HPV18	-	-	2	p16	-	-	FRA2D	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1002	HPV18	-	-	3	p14.2	-	-	FRA3B	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1003	HPV18	-	-	3	q27.1	-	-	FRA3C	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1004	HPV18	-	-	4	p16	-	-	FRA4A	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1005	HPV18	-	-	9	p21	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1006	HPV18	-	-	9	p22	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1007	HPV18	-	-	10	q22.1c	-	-	FRA10D	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1008	HPV18	-	-	14	q32.2	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1009	HPV18	-	-	16	p13.3	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1010	HPV18	-	-	18	q12.1	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1011	HPV18	-	-	22	q13.1	-	-	-	Tumor sample	27 HPV18+	CC	RS-PCR, Western blot	15771901
1012	HPV18	-	-	2	q32.1	-	NUP35	FRA2H	Tumor sample	5	CC	PCR	11711624
1013	HPV18	-	-	3	p25.1	-	SH3BP5	-	Tumor sample	5	CC	PCR	11711624
1014	HPV18	-	-	6	p24.3	-	RREB1	-	Tumor sample	5	CC	PCR	11711624
1015	HPV18	-	-	16	p12.2	-	PALB2	-	Tumor sample	5	CC	PCR	11711624
1016	HPV18	-	-	16	p13.2	-	TMEM114	-	Tumor sample	5	CC	PCR	11711624
1017	HPV18	-	-	17	q12	-	GRB7	-	Tumor sample	5	CC	PCR	11711624
1018	HPV18	-	-	17	q12	-	ERBB2	-	Tumor sample	5	CC	PCR	11711624
1019	HPV18	E1	2096	14	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1020	HPV18	E1	1972	7	q31	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1021	HPV18	E1	2213	8	p11.2	-	-	FRA7G	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1022	HPV18	E2	2892	8	p11.2	-	-	FRA7G	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1023	HPV18	E1	1988	17	-	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1024	HPV18	E1	1783	1	q41	-	-	-	Clinical tumor sample	-	CC	DIPS-PCR	11279600
1025	HPV18	E2	2952	8	-	-	-	-	Cervical cell line	-	C4-I	DIPS-PCR	11279600
1026	HPV18	L1/L2	5442	8	-	-	-	-	Cervical cell line	-	C4-I1	DIPS-PCR	11279600
1027	HPV18	E1	2497	8	-	-	-	-	Cervical cell line	-	HeLa	DIPS-PCR	11279600
1028	HPV18	E2	3100	8	-	-	-	-	Cervical cell line	-	HeLa	DIPS-PCR	11279600
1029	HPV18	L1	5736	8	-	-	-	-	Cervical cell line	-	HeLa1	DIPS-PCR	11279600
1030	HPV18	-	-	8	q24	-	myc, LRFN5	FRA8D, FRA8E, FRA8C	Tumor biopsy sample	4	CC	Karyotypic analysis and in-situ hybridization	1649348
1031	HPV18	-	-	2	p24	-	MYCN, BCKDHB	FRA2C	Tumor biopsy sample	4	CC	Karyotypic analysis and in-situ hybridization	1649348
1032	HPV18	-	-	8	q23.3-q24	-	myc	FRA8D, FRA8E, FRA8C	CC biopsies, Cervical cell lines	-	CC	Southern blot analysis, RNA transfer blot analysis	3029760
1033	HPV18	-	-	8	q24	-	myc	FRA8D, FRA8E, FRA8C	CC biopsies, Cervical cell lines	-	CC	Southern blot analysis, RNA transfer blot analysis	3029760
1034	HPV18	E1/E2	2643-3418	12	q13-q15	-	-	FRA12A	Cervical cell line	1	CC, SW756	Northern blots, Clonning, DNA sequencing	7592643
1035	HPV31	-	-	2	q22.3	146327290-146342732	-	FRA2K	tumor sample	115	SCC	RNA-seq	24390348
1036	HPV31	-	-	22	q13.31	46505183-46521319	MIRLET7BHG	FRA22A	tumor sample	115	SCC	RNA-seq	24390348
1037	HPV31	-	-	2	q32.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1038	HPV31	-	-	17	q21.2	-	KRT42P	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1039	HPV31	-	-	17	q21.2	-	-	-	CIN3, CC biopsies	66 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1040	HPV33	-	-	22	q11.21	18115823-18116389	BCL2L13	-	tumor sample	115	SCC	RNA-seq	24390348
1041	HPV33	-	-	8	q22.3	-	-	FRA8A	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1042	HPV33	-	-	16	q22.1	-	COG8	FRA16C;FRA16B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1043	HPV33	-	-	6	q15	-	-	FRA6G	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1044	HPV33	-	-	9	q21.13	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1045	HPV33	-	-	18	q11.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1046	HPV33	-	-	11	p15.4	-	MRVI1	FRA11C, FRA11I	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1047	HPV33	-	-	X	p22.2	-	MID1	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1048	HPV33	E1/E2/E4	1715-3515	5	p14	-	-	FRA5E	Cell line UT-DEC-1	1	CC, VIN	PCR, APOT assay, RT-PCR	12082029
1049	HPV33	E1	2061	3	q13.2	111499095	PLCXD2, PHLDB2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1050	HPV33	E1	2495	3	q13.2	111493569	PLCXD2, PHLDB2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1051	HPV33	E5	4043	13	q14.11	43506882	EPSTI1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1052	HPV33	E2	3623	13	q14.11	43504600	EPSTI1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1053	HPV33	E1	2460	13	q14.11	43679085	DNAJC15	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1054	HPV33	E2	2999	7	q21.3	96291800	LOC100506136	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1055	HPV33	E1	2391	11	p15.2	12897691	TEAD1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1056	HPV33	L1	5860	11	p15.2	12897731	TEAD1	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1057	HPV35	E1	995	17	q12	32128924	ASIC2	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
1058	HPV45	-	-	3	p25.1	13819967-13820197	-	-	Tumor Sample	115	SCC	RNA-seq	24390348
1059	HPV45	-	-	7	p21.1	17402526-17444267	LOC102659288	-	Tumor Sample	115	SCC	RNA-seq	24390348
1060	HPV45	-	-	10	p15.1	4638986-4788970	LINC00704	-	Tumor sample	115	SCC	RNA-seq	24390348
1061	HPV45	-	-	12	p11.22	28111538-28122517	PTHLH	-	Tumor sample	115	SCC	RNA-seq	24390348
1062	HPV45	-	-	10	p15.1	4639001-4788911	LINC00704, LINC00705	-	Tumor sample	115	SCC	WGS	24390348
1063	HPV45	-	-	1	p21.3	-	-	FRA1M, FRA1E	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1064	HPV45	-	-	2	q22.1	-	LRP1B	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1065	HPV45	-	-	2	q33.3	-	KLF7	FRA2I	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1066	HPV45	-	-	2	q24.1	-	GPD2	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1067	HPV45	-	-	3	q28	-	LEPREL1	FRA3C	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1068	HPV45	-	-	3	p26.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1069	HPV45	-	-	4	q13.3	-	CXCL6	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1070	HPV45	-	-	4	q32.3	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1071	HPV45	-	-	7	p13	-	-	FRA7D	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1072	HPV45	-	-	7	q31.2	-	CFTR	FRA7G	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1073	HPV45	-	-	8	q21.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1074	HPV45	-	-	8	q24.21	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1075	HPV45	-	-	9	p11.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1076	HPV45	-	-	9	p12	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1077	HPV45	-	-	11	q22.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1078	HPV45	-	-	12	q21.33	-	-	FRA12B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1079	HPV45	-	-	13	q22.1	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1080	HPV45	-	-	13	q22.1	-	KLF5;KLF12	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1081	HPV45	-	-	13	q21.32	-	PCDH9	FRA13B	CIN3, CC biopsies	65 (CC), 9 (CIN3)	CIN	APOT assay	18381461
1082	HPV45	-	-	14	q24.1	-	RAD51B	FRA14C	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1083	HPV45	-	-	17	q21.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1084	HPV45	-	-	20	q13.2	-	-	-	CIN3, CC biopsies	65 (CC), 9 (CIN3)	SCC	APOT assay	18381461
1085	HPV45	-	-	2	p24.3	-	MYCN	-	Cell lines	9	SCC	FISH, DIPS, APOT assay	16682952
1086	HPV45	-	-	1	q21-q23	-	-	FRA1F	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CC-10A, CC-10B	PCR, FISH	10554043
1087	HPV45	-	-	3	q26-q29	-	-	FRA3C	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CC-8	PCR, FISH	10554043
1088	HPV45	-	-	22	q13	-	-	FRA22A	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CC-10B	PCR, FISH	10554043
1089	HPV52	-	-	6	q21	108862857-108863479	-	FRA6F	Tumor sample	115	SCC	RNA-seq	24390348
1090	HPV52	-	-	14	q24.1	68986041-69029256	RAD51B	FRA14C	Tumor sample	115	SCC	RNA-seq	24390348
1091	HPV56	-	-	3	q28	189597860-189607242	TP63	FRA3C	Tumor sample	115	SCC	RNA-seq	24390348
1092	HPV56	-	-	18	q21.33	61302266-61351034	SERPINB3, SERPINB4	FRA18B	Tumor sample	115	SCC	RNA-seq	24390348
1093	HPV6	E1	745	10	p15.1	-	AKR1C3	-	FFPE specimens, Fresh frozen tumor tissue	-	LC	FISH, APOT assay, PCR	23437342
1094	HPV6	L2	4907-5410	14	q21.1	-	LRFN5	-	Tumor biopsy sample	1	Tonsillar carcinoma	Southern blot hybridization	1655962
1095	HPV67	-	-	3	p23-26	-	-	-	Tumor sample, Cervical cell lines	74 (SCC (55), AC (10), Adenosquamous carcinoma (9))	CC-11	PCR, FISH	10554043
1096	HPV68	-	-	18	q21	-	APM1	FRA18B	Cervical cell line	-	CC, ME180	Clonning, RT-PCR, FISH	9427755
1097	HPV16	-	-	1	p36.21	-	c1orf196	FRA1A	Biopsy samples	69	CC	APOT assay, PCR	22761851
1098	HPV16	-	-	1	p36.22	-	CASZ1	FRA1A	Biopsy samples	69	CC	APOT assay, PCR	22761851
1099	HPV16	-	-	1	q42.3	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1100	HPV16	-	-	2	p16.3	-	NRXN1	FRA2D	Biopsy samples	69	CC	APOT assay, PCR	22761851
1101	HPV16	-	-	2	p23.2	-	GPN1	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1102	HPV16	-	-	2	q33.1	-	ORC2	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1103	HPV16	-	-	2	q32.3	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1104	HPV16	-	-	2	q33.1	-	BZW1	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1105	HPV16	-	-	2	q22.3	-	-	FRA2K	Biopsy samples	69	CC	APOT assay, PCR	22761851
1106	HPV16	-	-	2	q34	-	ERBB4	FRA2I	Biopsy samples	69	CC	APOT assay, PCR	22761851
1107	HPV16	-	-	3	p21.31	-	USP4	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1108	HPV16	-	-	3	q26.2	-	MDS1	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1109	HPV16	-	-	3	q28	-	TP63	FRA3C	Biopsy samples	69	CC	APOT assay, PCR	22761851
1110	HPV16	-	-	3	q28	-	CLDN16	FRA3C	Biopsy samples	69	CC	APOT assay, PCR	22761851
1111	HPV16	-	-	3	q28	-	LEPREL1	FRA3C	Biopsy samples	69	CC	APOT assay, PCR	22761851
1112	HPV16	-	-	4	p14	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1113	HPV16	-	-	4	q13.3	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1114	HPV16	-	-	4	q23	-	c4orf17	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1115	HPV16	-	-	4	q31.21	-	-	FRA4C	Biopsy samples	69	CC	APOT assay, PCR	22761851
1116	HPV16	-	-	6	p21.1	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1117	HPV16	-	-	6	p25.1	-	-	FRA6B	Biopsy samples	69	CC	APOT assay, PCR	22761851
1118	HPV16	-	-	8	q24.21	-	LOC727677	FRA8C,FRA8E	Biopsy samples	69	CC	APOT assay, PCR	22761851
1119	HPV16	-	-	9	p13.3	-	UBAP2	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1120	HPV16	-	-	9	p23	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1121	HPV16	-	-	9	q21.32	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1122	HPV16	-	-	10	q24.2	-	-	FRA10A	Biopsy samples	69	CC	APOT assay, PCR	22761851
1123	HPV16	-	-	12	q21.33	-	-	FRA12B	Biopsy samples	69	CC	APOT assay, PCR	22761851
1124	HPV16	-	-	13	q22.1	-	-	FRA13B	Biopsy samples	69	CC	APOT assay, PCR	22761851
1125	HPV16	-	-	15	q22.1	-	LIPC	FRA15A	Biopsy samples	69	CC	APOT assay, PCR	22761851
1126	HPV16	-	-	15	q26.1	-	SEMA4B	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1127	HPV16	-	-	17	p11.2	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1128	HPV16	-	-	19	p13.11	-	GATAD2A	FRA19B	Biopsy samples	69	CC	APOT assay, PCR	22761851
1129	HPV16	-	-	19	p13.12	-	NANOS3	FRA19B	Biopsy samples	69	CC	APOT assay, PCR	22761851
1130	HPV16	-	-	21	q11.2	-	-	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1131	HPV16	-	-	X	p21.3	-	ARX	-	Biopsy samples	69	CC	APOT assay, PCR	22761851
1132	HPV16	-	-	1	p34	-	BMP8	-	Cancer samples	4	CC	PCR	8732866
1133	HPV16	-	-	2	q34-q35	-	MAP2	-	Cancer samples	4	CC	PCR	8732866
1134	HPV16	-	-	7	p22	-	-	FRA7B	Cancer samples	4	CC	PCR	8732866
1135	HPV16	-	-	8	p12	-	-	-	Cancer samples	4	CC	PCR	8732866
1136	HPV16	E1	880	5	q14	-	-	FRA5E	Tumour biopsies	24	HNSCC	APOT assay, RT-PCR	11896579
1137	HPV16	E1	950	6	p24	-	-	-	Tumour biopsies	24	HNSCC	APOT assay, RT-PCR	11896579
1138	HPV16	-	-	8	q24.1	-	MYC	FRA8C	Uterine cervix cell line	1	Argyrophil small cell carcinoma (ASCC)	FISH	1646197
1139	HPV16	-	-	13	q21-q31	-	-	-	CC cell line (SiHa)	1	CC	FISH, APOT assay	2821369
1140	HPV16	-	-	2	q22.22	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1141	HPV16	-	-	8	q24.12	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1142	HPV16	-	-	4	p16.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1143	HPV16	-	-	12	q24.22	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1144	HPV16	-	-	2	q24.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1145	HPV16	-	-	4	q34.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1146	HPV16	-	-	3	q27.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1147	HPV16	-	-	2	q22.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1148	HPV16	-	-	5	q31.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1149	HPV16	-	-	5	q13.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1150	HPV16	-	-	2	q32.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1151	HPV16	-	-	4	q13.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1152	HPV16	-	-	9	p23	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1153	HPV16	-	-	X	p22.31	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1154	HPV16	-	-	20	p12.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1155	HPV16	-	-	15	q21.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1156	HPV16	-	-	6	p22.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1157	HPV16	-	-	6	q23.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1158	HPV16	-	-	19	p13.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1159	HPV16	-	-	7	p21.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1160	HPV16	-	-	5	p14.2	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1161	HPV16	-	-	20	q11.21	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1162	HPV16	-	-	2	p23.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1163	HPV16	-	-	8	q24.23	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1164	HPV16	-	-	2	q32.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1165	HPV16	-	-	1	q32.2	-	-	-	CC tumor sample, cervical cell lines (IC7 CL)	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1166	HPV16	-	-	1	p33	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1167	HPV16	-	-	11	q22.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1168	HPV16	-	-	X	q21.31	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1169	HPV16	-	-	8	q24.21	-	-	-	CC tumor sample, cervical cell lines (IC3 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1170	HPV16	-	-	14	q23.2	-	-	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1171	HPV16	-	-	4	p16.1	-	-	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1172	HPV16	-	-	13	q21.23	-	-	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1173	HPV16	-	-	5	q35.3	-	-	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1174	HPV16	-	-	X	p11.3	-	LOC158537	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1175	HPV16	-	-	10	q23.32	-	DYSF, MYOF	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1176	HPV16	-	-	3	q22.3	-	LOC152028	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1177	HPV16	-	-	7	q21.11	-	LOC168295	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1178	HPV16	-	-	2	q22.1	-	LOC151128	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1179	HPV16	-	-	6	q21	-	RTN4IP1	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1180	HPV16	-	-	2	q32.3	-	GLS	-	CC tumor sample	-	SCC	APOT assay, PCR	12377107
1181	HPV16	-	-	4	p16	-	GMPS	-	CC tumor sample	-	-	RH-mapping	12377107
1182	HPV16	-	-	5	q35	-	TCRA	-	CC tumor sample	-	-	RH-mapping	12377107
1183	HPV16	-	-	13	q21	-	CKAP2, LEU2, PCDH8	-	CC tumor sample	-	-	RH-mapping	12377107
1184	HPV16	-	-	14	q23-q24	-	NUMB, ZNF174, LTBP2, PGF	-	CC tumor sample	-	-	RH-mapping	12377107
1185	HPV16	-	-	X	p11.21 - p11.4	-	WASF2	-	CC tumor sample	-	-	RH-mapping	12377107
1186	HPV16	-	-	8	q24	-	-	-	CC cultures	5	CC	COBRA-FISH	12034529
1187	HPV16	-	-	17	q21-q23	-	-	-	CC cultures	5	CC	COBRA-FISH	12034529
1188	HPV16	-	2493	6	q21	110404117	-	-	Anal biopsy samples	39	AIN	RS-PCR	16186736
1189	HPV16	-	3184	8	q13.3	65818453	-	-	Anal biopsy samples	39	AIN	RS-PCR	16186736
1190	HPV16	-	3083	5	q23.1	116425334	-	-	Anal biopsy samples	39	AIN	RS-PCR	16186736
1191	HPV16	-	2729	-	-	-	-	-	Anal biopsy samples	39	AIN	RS-PCR	16186736
1192	HPV16	-	2624	17	q23.2	57796008	-	-	Anal biopsy samples	39	AIN	RS-PCR	16186736
1193	HPV18	-	-	8	q21-q22	-	-	FRA8B	CC cell line (HeLa)	1	CC	FISH, APOT assay	2821369
1194	HPV18	-	-	1	p22-q31	-	-	-	Cell line	1	CC	FISH	1381951
1195	HPV18	-	-	1	q12-q21	-	-	-	Cell line	1	CC	FISH	1381951
1196	HPV18	-	-	1	p36.22	-	-	FRA1A	Biopsy sample	18	CC	APOT assay, PCR	22761851
1197	HPV18	-	-	1	q42.3	-	LYST	-	Biopsy sample	18	CC	APOT assay, PCR	22761851
1198	HPV18	-	-	2	q22.3	-	-	FRA2K	Biopsy sample	18	CC	APOT assay, PCR	22761851
1199	HPV18	-	-	5	q13.2	-	RGNEF	-	Biopsy sample	18	CC	APOT assay, PCR	22761851
1200	HPV18	-	-	5	q23.1	-	-	-	Biopsy sample	18	CC	APOT assay, PCR	22761851
1201	HPV18	-	-	7	q34	-	UBN2	-	Biopsy sample	18	CC	APOT assay, PCR	22761851
1202	HPV18	-	-	8	q24.21	-	LOC727677	FRA8C,FRA8E	Biopsy sample	18	CC	APOT assay, PCR	22761851
1203	HPV18	-	-	9	p21.3	-	-	FRA9C, FRA9D	Biopsy sample	18	CC	APOT assay, PCR	22761851
1204	HPV18	-	-	13	q22.1	-	-	FRA13B	Biopsy sample	18	CC	APOT assay, PCR	22761851
1205	HPV18	-	-	17	p13.1	-	FXR2	FRA17A	Biopsy sample	18	CC	APOT assay, PCR	22761851
1206	HPV18	-	-	17	q23.1	-	TMEM49	FRA17B	Biopsy sample	18	CC	APOT assay, PCR	22761851
1207	HPV18	-	-	19	p13.3	-	CNN2	FRA19B	Biopsy sample	18	CC	APOT assay, PCR	22761851
1208	HPV18	-	-	5	p11-q15	-	-	-	Cell line	-	CC	FISH	2838160
1209	HPV18	-	-	8	q24	-	MYC	FRA8C	Cell line	-	CC	FISH	2838160
1210	HPV18	-	-	9	q31-q34	-	-	-	Cell line	-	CC	FISH	2838160
1211	HPV18	-	-	22	q12-q13	-	-	-	Cell line	-	CC	FISH	2838160
1212	HPV18	-	-	8	q24	-	MYC	FRA8C	HeLa cells	-	CC	FISH	2824333
1213	HPV18	-	-	2	q13	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1214	HPV18	-	-	5	p13.2	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1215	HPV18	-	-	2	q34	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1216	HPV18	-	-	1	p22.2	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1217	HPV18	-	-	18	p11.32	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1218	HPV18	-	-	12	q21.31	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1219	HPV18	-	-	8	q24.21	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1220	HPV18	-	-	14	q24.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1221	HPV18	-	-	5	q35.1	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	Neuroendocrine carcinoma	DIPS-PCR	20527025
1222	HPV18	-	-	8	q24.21	-	-	-	CC tumor sample, cervical cell lines (IC1 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1223	HPV18	-	-	7	q31.1	-	-	-	CC tumor sample, cervical cell lines (IC5 CL)	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1224	HPV18	-	-	8	q24.21	-	-	-	CC tumor sample, cervical cell lines (IC6 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1225	HPV18	-	-	13	q22.1	-	-	-	CC tumor sample, cervical cell lines (IC6 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1226	HPV18	-	-	19	p13.2	-	-	-	CC tumor sample, cervical cell lines (IC8 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1227	HPV18	-	-	2	p25.3	-	-	-	CC tumor sample, cervical cell lines (CAC-1 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1228	HPV18	-	-	8	q24.21	-	-	-	CC tumor sample, cervical cell lines (CAC-1 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1229	HPV18	-	-	15	q21.3	-	-	-	CC tumor sample, cervical cell lines (CAC-1 CL)	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1230	HPV18	-	-	17	q21-q23	-	-	-	CC cultures	5	CC	COBRA-FISH	12034529
1231	HPV18	-	-	1	q42	-	-	-	CC cultures	5	CC	COBRA-FISH	12034529
1232	HPV18	-	-	8	q24	-	-	-	CC cultures	5	CC	COBRA-FISH	12034529
1233	HPV1	-	-	2	q33	-	-	-	Human Keratinocyte Cell Line	-	CC	FISH, PCR	2158183
1234	HPV6a	-	-	10	q24	-	HOX11, LYT10, PAX2	-	Tumor sample	1	Tonsillar carcinoma	FISH, PCR	8118820
1235	HPV6a	-	-	14	q13.3-q21.1	-	-	-	Tumor sample	-	Tonsillar carcinoma	FISH,PCR, BAC DNA End-Sequencing	12697057
1236	HPV33	-	-	9	p13	-	-	-	Cervical Keratinocyte Cell Lines (ck11 and ck12)	12	CC	FISH	8780750
1237	HPV33	-	-	13	q33-q34	-	-	-	Cervical Keratinocyte Cell Lines (ck1 to ck10)	12	CC	FISH	8780750
1238	HPV33	E6	509	13	q14.11	43537483	EPSTI1	-	SSC	239	HNSCC	RNA-seq	23740984
1239	HPV33	E4	3356	13	q14.11	43528079	EPSTI1	-	SSC	239	HNSCC	RNA-seq	23740984
1240	HPV33	L1	5597	13	q14.11	43528256	EPSTI1	-	SSC	239	HNSCC	RNA-seq	23740984
1241	HPV33	E6	93	11	p15.2	12897532	TEAD1	-	SSC	239	HNSCC	RNA-seq	23740984
1242	HPV33	E7	559	11	p15.2	12897531	TEAD1	-	SSC	239	HNSCC	RNA-seq	23740984
1243	HPV33	E1	858	11	p15.2	12897627	TEAD1	-	SSC	239	HNSCC	RNA-seq	23740984
1244	HPV33	E6	116	21	q22.12	36470118	MIR802	-	SSC	239	HNSCC	RNA-seq	23740984
1245	HPV33	E7	560	21	q22.12	36470162	MIR802	-	SSC	239	HNSCC	RNA-seq	23740984
1246	HPV33	E1	858	21	q22.12	36470118	MIR802	-	SSC	239	HNSCC	RNA-seq	23740984
1247	HPV33	E4	3347	3	q13.2	111451446	PHLDB2	-	SSC	239	HNSCC	RNA-seq	23740984
1248	HPV33	E1	1905	3	q13.2	111499049	PHLDB2	-	SSC	239	HNSCC	RNA-seq	23740984
1249	HPV33	E7	671	3	q13.2	111496513	PHLDB2	-	SSC	239	HNSCC	RNA-seq	23740984
1250	HPV33	E1	858	3	q13.2	111413679	PLCXD2	-	SSC	239	HNSCC	RNA-seq	23740984
1251	HPV33	E7	747	3	q13.2	111431547	PLCXD2	-	SSC	239	HNSCC	RNA-seq	23740984
1252	HPV35	E7	698	17	q12	32128921	ACCN1, ASIC2	-	SSC	239	HNSCC	RNA-seq	23740984
1253	HPV35	E1	863	17	q12	32128931	ACCN1, ASIC2	-	SSC	239	HNSCC	RNA-seq	23740984
1254	HPV35	E6	128	17	q12	32143974	ACCN1, ASIC2	-	SSC	239	HNSCC	RNA-seq	23740984
1255	HPV45	-	-	X	p11.3	-	-	-	CC tumor sample, cervical cell lines	34 (Tumor sample), 8 (cell lines)	AC	DIPS-PCR	20527025
1256	HPV45	-	-	2	p24.3	-	-	-	CC tumor sample, cervical cell lines (IC4 CL)	34 (Tumor sample), 8 (cell lines)	SCC	DIPS-PCR	20527025
1257	HPV68	-	-	18	q21	-	APM1, DCC, DPC4	-	cervical carcinoma cell line ME180	1	CC	FISH	9427755