HPVbase: Viral Resource for Papillomavirus and Biomarkers Study

HPV Integration and Breakpoints

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S.No.	HPV Type	HPV region	Viral Integrant/ Breakpoint	Human Chr. No.	Cytoband	Human Chr. location/ Cellular breakpoint	Target genes	Fragile Sites	Sample type/ Specimen	Sample Size	Cancer type/ Histology	Detection Technique	References
1	HPV16	E1	918	14	q24.1	68699686	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
2	HPV16	E4	3434	14	q24.1	68741700	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
3	HPV16	E5	3978	14	q24.1	68683570	RAD51B	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
4	HPV16	E6	447	13	q22.1	73620048	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
5	HPV16	E1	2363	13	q22.1	73619896	-	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
6	HPV16	E1	2419	11	q13.5	76087550	PRKRIR	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
7	HPV16	L1	5811	11	q13.5	76096216	LOC100506127	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
8	HPV16	E1	2096	11	q13.5	76083005	PRKRIR	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
9	HPV16	L1	5746	18	q21.33	61317176	SERPINB4	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082
10	HPV16	L1	5726	18	q21.33	61463507	SERPINB7	-	Tumor Sample	35	HNSCC	WGS, RNA-seq, Whole-Exome sequencing, PCR	25313082

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