miRNA Id: | VMR_0038 |
Virus: | BK polyomavirus (BKV) |
Taxonomy: | View |
Nomenclature: | bkv-miR-b1-3p |
miRNA Sequence: | ugcuugauccauguccagaguc |
Length: | 22 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 50 |
pre-miRNA: | bkv-mir-b1 |
pre-miRNA Sequence: | gggaaucuucagcaggggcugaaguaucugagacuugggaagagcauugugauugggauucagugcuugauccauguccagagucuucaguuucugaauccu |
Arm: | 3p |
Cell line: | U87, Vero, HK-2 cells |
Method: | Northern blot analysis, RT-PCR |
Reference: | 18684810, 24735545 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |