VIRmiRNA -A database of viral miRNA
VMR_0038 details

miRNA Id:VMR_0038
Virus:BK polyomavirus (BKV)
Taxonomy:View
Nomenclature:bkv-miR-b1-3p
miRNA Sequence: ugcuugauccauguccagaguc
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):50
pre-miRNA:bkv-mir-b1
pre-miRNA Sequence:gggaaucuucagcaggggcugaaguaucugagacuugggaagagcauugugauugggauucagugcuugauccauguccagagucuucaguuucugaauccu
Arm: 3p
Cell line: U87, Vero, HK-2 cells
Method:Northern blot analysis, RT-PCR
Reference: 18684810, 24735545
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed