VIRmiRNA -A database of viral miRNA
VMR_0342 details

miRNA Id:VMR_0342
Virus:Herpes simplex virus 2 (HSV2)
Taxonomy:View
Nomenclature:hsv2-miR-h9-5p
miRNA Sequence: cucggagguggagucgcggu
Length: 20
Predicted secondary structure (UNAfold):
GC Content (%):70
pre-miRNA:hsv2-mir-h9
pre-miRNA Sequence:cucggagguggagucgcggugaaggucgucgucagagauucccaccucggucuccuccuccgag
Arm: 5p
Cell line: HEK293, Vero cells
Method:Solexa(NGS)
Reference: 20181707
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed