VIRmiRNA -A database of viral miRNA
VMR_0390 details

miRNA Id:VMR_0390
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k10a_+1_5
miRNA Sequence: uuaguguuguccccccgagugg(c)
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):60.87
pre-miRNA:na
pre-miRNA Sequence:na
Arm: 3p
Cell line: BC-1, BCBL-1, BC-3 cells
Method:Deep sequencing
Reference: 22100165
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed