miRNA Id: | VMR_0390 |
Virus: | Kaposi sarcoma-associated herpesvirus (KSHV) |
Taxonomy: | View |
Nomenclature: | kshv-miR-k10a_+1_5 |
miRNA Sequence: | uuaguguuguccccccgagugg(c) |
Length: | 23 |
Predicted secondary structure (UNAfold): | ![]() |
GC Content (%): | 60.87 |
pre-miRNA: | na |
pre-miRNA Sequence: | na |
Arm: | 3p |
Cell line: | BC-1, BCBL-1, BC-3 cells |
Method: | Deep sequencing |
Reference: | 22100165 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |