VIRmiRNA -A database of viral miRNA
VMR_0419 details

miRNA Id:VMR_0419
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k3_+1_5
miRNA Sequence: aucacauucugaggacggcagcga
Length: 24
Predicted secondary structure (UNAfold):
GC Content (%):54.17
pre-miRNA:na
pre-miRNA Sequence:na
Arm: 5p
Cell line: BC-1, BCBL-1, BC-3 cells
Method:Deep sequencing
Reference: 22100165
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed