VIRmiRNA -A database of viral miRNA
VMR_0452 details

miRNA Id:VMR_0452
Virus:Mareks disease virus type 1 (MDV1)
Taxonomy:View
Nomenclature:mdv1-miR-m1*
miRNA Sequence: ugcugcgcaugaaagagcga
Length: 20
Predicted secondary structure (UNAfold):
GC Content (%):55
pre-miRNA:mdv1-mir-m1
pre-miRNA Sequence:uuccccuuuugcuuguucacugugcggcauuauuacauuuacaccgguaaugcugcgcaugaaagagcgaacggaa
Arm: 3p
Cell line: MSBI, CU91, UA30 cells
Method:Northern blot analysis, Solexa(NGS)
Reference: 16912324, 18842708, 21645299, 24449754
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed