VIRmiRNA -A database of viral miRNA
VMR_1117 details

miRNA Id:VMR_1117
Virus:Rhesus rhadinovirus (RRV)
Taxonomy:View
Nomenclature:rrv-miR-rr1-4-3p
miRNA Sequence: cucguuaaccgcccuccuga
Length: 20
Predicted secondary structure (UNAfold):
GC Content (%):60
pre-miRNA:rrv-mir-rr1-4
pre-miRNA Sequence:ccguguugugauuuggggagggcggucagcgcgcguucccguguuuagggaauauguauaucgcucguuaaccgcccucccgagauuacugcucgg
Arm: 3p
Cell line: HEK293T cells
Method:Deep sequencing
Reference: 20655562
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed