VIRsiRNAdb

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• VsiRNAid

Total number of Results for 3\'UTR(AS) are 11
Results from 0 - 25

siRNA sequence "aaagguccgugagccgcuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaagguccgugagccgcuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1207 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "aaagguccgugagccgcuu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "guggcuccaucuuagcccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "guggcuccaucuuagcccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1193 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "guggcuccaucuuagcccu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "gugaaagguccgugagccg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gugaaagguccgugagccg" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1203 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "gugaaagguccgugagccg" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "uccaucuuagcccuaguca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uccaucuuagcccuaguca" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1197 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "uccaucuuagcccuaguca" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ugaaagguccgugagccgc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugaaagguccgugagccgc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1205 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ugaaagguccgugagccgc" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "agucacggcuagcugugaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agucacggcuagcugugaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1201 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "agucacggcuagcugugaa" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "uagucacggcuagcuguga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uagucacggcuagcuguga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1199 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "uagucacggcuagcuguga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "acugcagagagugcugaua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "acugcagagagugcugaua" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1213 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "acugcagagagugcugaua" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "gcuccaucuuagcccuagu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gcuccaucuuagcccuagu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1195 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48

Offtargets for "gcuccaucuuagcccuagu" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "agguccgugagccgcuuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agguccgugagccgcuuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1209 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "agguccgugagccgcuuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886

siRNA sequence "ugacugcagagagugcuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugacugcagagagugcuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1211 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48

Offtargets for "ugacugcagagagugcuga" siRNA in Human Genome sequences
See at Genbank
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1207	aaagguccgugagccgcuu	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	67	17305886	Blast SL	refseqs
virsi1193	guggcuccaucuuagcccu	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	65	17305886	Blast SL	refseqs
virsi1203	gugaaagguccgugagccg	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	61	17305886	Blast SL	refseqs
virsi1197	uccaucuuagcccuaguca	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	55	17305886	Blast SL	refseqs
virsi1205	ugaaagguccgugagccgc	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	55	17305886	Blast SL	refseqs
virsi1201	agucacggcuagcugugaa	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	43	17305886	Blast SL	refseqs
virsi1199	uagucacggcuagcuguga	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	43	17305886	Blast SL	refseqs
virsi1213	acugcagagagugcugaua	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	22	17305886	Blast SL	refseqs
virsi1195	gcuccaucuuagcccuagu	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	9	17305886	Blast SL	refseqs
virsi1209	agguccgugagccgcuuga	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	6	17305886	Blast SL	refseqs
virsi1211	ugacugcagagagugcuga	Hepatitis C Virus [HCV]	3'UTR(AS)	Huh-7	Protein	3	17305886	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm