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- Family of Virus
- Virus Name
- Gene Name
- Pubmed Id
- VsiRNAid
Total number of Results for 3\'UTR(AS) are 11
Results from 0 - 25
siRNA sequence "aaagguccgugagccgcuu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaagguccgugagccgcuu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1207 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "aaagguccgugagccgcuu" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "guggcuccaucuuagcccu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "guggcuccaucuuagcccu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1193 " record
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48
Length: 19
GC Content:58 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48
Offtargets for "guggcuccaucuuagcccu" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "gugaaagguccgugagccg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gugaaagguccgugagccg" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1203 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "gugaaagguccgugagccg" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "uccaucuuagcccuaguca" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uccaucuuagcccuaguca" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1197 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "uccaucuuagcccuaguca" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "ugaaagguccgugagccgc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugaaagguccgugagccgc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1205 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "ugaaagguccgugagccgc" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "agucacggcuagcugugaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agucacggcuagcugugaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1201 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "agucacggcuagcugugaa" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "uagucacggcuagcuguga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "uagucacggcuagcuguga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1199 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "uagucacggcuagcuguga" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "acugcagagagugcugaua" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "acugcagagagugcugaua" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1213 " record
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:47 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "acugcagagagugcugaua" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "gcuccaucuuagcccuagu" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gcuccaucuuagcccuagu" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1195 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Transfection Reagent: Oligofectamine
Incubation Time (Hours):48
Offtargets for "gcuccaucuuagcccuagu" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "agguccgugagccgcuuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agguccgugagccgcuuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1209 " record
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:63 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "agguccgugagccgcuuga" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
siRNA sequence "ugacugcagagagugcuga" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ugacugcagagagugcuga" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1211 " record
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Strain of Virus: Genotype 1b
Incubation Time (Hours):48
Offtargets for "ugacugcagagagugcuga" siRNA in Human Genome sequences
Pubmed:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
Article:Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.
Authors:Smith RM, Smolic R, Volarevic M, Wu GY.
Journal:J Viral Hepat. 2007 Mar;14(3):194-212.
Entrez:17305886
| VIRsiRNAid | siRNA Sequence |  Virus_Name | Target Region | Cell Line | Test Object | Efficacy | PMID | Offtarget | Align With | ALIGN0 Result |
|---|---|---|---|---|---|---|---|---|---|---|
| virsi1207 | aaagguccgugagccgcuu | Hepatitis C Virus [HCV] |  SL | refseqs |  | |||||
| virsi1193 | guggcuccaucuuagcccu | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1203 | gugaaagguccgugagccg | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1197 | uccaucuuagcccuaguca | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1205 | ugaaagguccgugagccgc | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1201 | agucacggcuagcugugaa | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1199 | uagucacggcuagcuguga | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1213 | acugcagagagugcugaua | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1195 | gcuccaucuuagcccuagu | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1209 | agguccgugagccgcuuga | Hepatitis C Virus [HCV] | SL | refseqs |  | |||||
| virsi1211 | ugacugcagagagugcuga | Hepatitis C Virus [HCV] |  SL | refseqs |  |
: siRNA specific for both strands: siRNA specific for only one strands
: siRNA Not specific SL: siRNA seedlocator algorithm