VIRsiRNAdb

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• VsiRNAid

Total number of Results for 3A are 6
Results from 0 - 25

siRNA sequence "cagcuugagucuacacaaa" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "cagcuugagucuacacaaa" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1286 " record
Length: 19
GC Content:42 %
Starting position: 25888
Strain of Virus: BJ04
GenBank Acc: AY279354
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "cagcuugagucuacacaaa" siRNA in Human Genome sequences
See AY279354 at Genbank
Pubmed:16894145
Article:Severe acute respiratory syndrome-associated coronavirus 3a protein forms an ion channel and modulates virus release.
Authors:Lu W, Zheng BJ, Xu K, Schwarz W, Du L, Wong CK, Chen J, Duan S, Deubel V, Sun B.
Journal:Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12540-5. Epub 2006 Aug 7.
Entrez:16894145

siRNA sequence "gugucucuugucuauguca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gugucucuugucuauguca" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1259 " record
Length: 19
GC Content:42 %
Starting position: 214
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gugucucuugucuauguca" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "ugcaucaacgcauguagaa" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ugcaucaacgcauguagaa" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1284 " record
Length: 19
GC Content:42 %
Starting position: 25600
Strain of Virus: BJ04
GenBank Acc: AY279354
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "ugcaucaacgcauguagaa" siRNA in Human Genome sequences
See AY279354 at Genbank
Pubmed:16894145
Article:Severe acute respiratory syndrome-associated coronavirus 3a protein forms an ion channel and modulates virus release.
Authors:Lu W, Zheng BJ, Xu K, Schwarz W, Du L, Wong CK, Chen J, Duan S, Deubel V, Sun B.
Journal:Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12540-5. Epub 2006 Aug 7.
Entrez:16894145

siRNA sequence "agauacaauugucguuacu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "agauacaauugucguuacu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1285 " record
Length: 19
GC Content:32 %
Starting position: 25743
Strain of Virus: BJ04
GenBank Acc: AY279354
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "agauacaauugucguuacu" siRNA in Human Genome sequences
See AY279354 at Genbank
Pubmed:16894145
Article:Severe acute respiratory syndrome-associated coronavirus 3a protein forms an ion channel and modulates virus release.
Authors:Lu W, Zheng BJ, Xu K, Schwarz W, Du L, Wong CK, Chen J, Duan S, Deubel V, Sun B.
Journal:Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12540-5. Epub 2006 Aug 7.
Entrez:16894145

siRNA sequence "cgcucaguaaggacaccag" alignment with "Human Rhinovirus" virus reference Genome sequences
siRNA sequence matching with "cgcucaguaaggacaccag" Human Rhinovirus" Virus reference Genome sequences
Browse all the records for "Human Rhinovirus" virus
Browse "virsi2039 " record
Length: 19
GC Content:58 %
GenBank Acc: L24917
Transfection Reagent: Oligofectamine
Incubation Time (Hours):72

Offtargets for "cgcucaguaaggacaccag" siRNA in Human Genome sequences
See L24917 at Genbank
Pubmed:14670593
Article:Small interfering RNA molecules as potential anti-human rhinovirus agents: in vitro potency, specificity, and mechanism.
Authors:Phipps KM, Martinez A, Lu J, Heinz BA, Zhao G.
Journal:Antiviral Res. 2004 Jan;61(1):49-55.
Entrez:14670593

siRNA sequence "ugauagugcaguagcugag" alignment with "Hepatitis A Virus [HAV]" virus reference Genome sequences
siRNA sequence matching with "ugauagugcaguagcugag" Hepatitis A Virus [HAV]" Virus reference Genome sequences
Browse all the records for "Hepatitis A Virus [HAV]" virus
Browse "virsi1012 " record
Length: 19
GC Content:47 %
Starting position: 4999
Strain of Virus: HM175
GenBank Acc: M59808
Transfection Reagent: TransMessenger
Incubation Time (Hours):48

Offtargets for "ugauagugcaguagcugag" siRNA in Human Genome sequences
See M59808 at Genbank
Pubmed:15120607
Article:Interference of hepatitis A virus replication by small interfering RNAs.
Authors:Kanda T, Kusov Y, Yokosuka O, Gauss-MÃŒller V.
Journal:Biochem Biophys Res Commun. 2004 May 28;318(2):341-5.
Entrez:15120607


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1286	cagcuugagucuacacaaa	SARS Coronavirus	3A	FRhK-4	Protein	100	16894145	Blast SL	refseqs
virsi1259	gugucucuugucuauguca	Human Coxsackievirus [CV]	3A	293T	mRNA	92	18662724	Blast SL	refseqs
virsi1284	ugcaucaacgcauguagaa	SARS Coronavirus	3A	FRhK-4	Protein	90	16894145	Blast SL	refseqs
virsi1285	agauacaauugucguuacu	SARS Coronavirus	3A	FRhK-4	Protein	85	16894145	Blast SL	refseqs
virsi2039	cgcucaguaaggacaccag	Human Rhinovirus	3A	HeLa	Plaque Count	80	14670593	Blast SL	refseqs
virsi1012	ugauagugcaguagcugag	Hepatitis A Virus [HAV]	3A	Huh-T7	Protein	0	15120607	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm