VIRsiRNAdb

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Total number of Results for UL27 are 2
Results from 0 - 25

siRNA sequence "gaguucugcacgaucacgu" alignment with "Herpes Simplex Virus [HSV]" virus reference Genome sequences
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Browse all the records for "Herpes Simplex Virus [HSV]" virus
Browse "virsi1900 " record
Length: 19
GC Content:53 %
Starting position: 54370
Strain of Virus: HSV-2
GenBank Acc: NC_001798
Transfection Reagent: TransIT-TKO
Incubation Time (Hours):24

Offtargets for "gaguucugcacgaucacgu" siRNA in Human Genome sequences
See NC_001798 at Genbank
Pubmed:16306938
Article:An siRNA-based microbicide protects mice from lethal herpes simplex virus 2 infection.
Authors:Palliser D, Chowdhury D, Wang QY, Lee SJ, Bronson RT, Knipe DM, Lieberman J.
Journal:Nature. 2006 Jan 5;439(7072):89-94. Epub 2005 Nov 23.
Entrez:16306938

siRNA sequence "uaugugguuauacguaaac" alignment with "Herpes Simplex Virus [HSV]" virus reference Genome sequences
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Browse all the records for "Herpes Simplex Virus [HSV]" virus
Browse "virsi1899 " record
Length: 19
GC Content:32 %
Starting position: 54588
Strain of Virus: HSV-2
GenBank Acc: NC_001798
Transfection Reagent: TransIT-TKO
Incubation Time (Hours):24

Offtargets for "uaugugguuauacguaaac" siRNA in Human Genome sequences
See NC_001798 at Genbank
Pubmed:16306938
Article:An siRNA-based microbicide protects mice from lethal herpes simplex virus 2 infection.
Authors:Palliser D, Chowdhury D, Wang QY, Lee SJ, Bronson RT, Knipe DM, Lieberman J.
Journal:Nature. 2006 Jan 5;439(7072):89-94. Epub 2005 Nov 23.
Entrez:16306938


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1900	gaguucugcacgaucacgu	Herpes Simplex Virus [HSV]	UL27	Vero	mRNA	75	16306938	Blast SL	refseqs
virsi1899	uaugugguuauacguaaac	Herpes Simplex Virus [HSV]	UL27	Vero	mRNA	52	16306938	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm