VIRsiRNAdb

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Total number of Results for UL29 are 3
Results from 0 - 25

siRNA sequence "uuggaauugauugcgaaag" alignment with "Herpes Simplex Virus [HSV]" virus reference Genome sequences
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Browse all the records for "Herpes Simplex Virus [HSV]" virus
Browse "virsi1907 " record
Length: 19
GC Content:37 %
Starting position: 60324
Strain of Virus: HSV-2
GenBank Acc: NC_001798
Transfection Reagent: siQUEST
Incubation Time (Hours):24

Offtargets for "uuggaauugauugcgaaag" siRNA in Human Genome sequences
See NC_001798 at Genbank
Pubmed:19154990
Article:Durable protection from Herpes Simplex Virus-2 transmission following intravaginal application of siRNAs targeting both a viral and host gene.
Authors:Wu Y, Navarro F, Lal A, Basar E, Pandey RK, Manoharan M, Feng Y, Lee SJ, Lieberman J, Palliser D.
Journal:Cell Host Microbe. 2009 Jan 22;5(1):84-94.
Entrez:19154990

siRNA sequence "uuggaauugauugcgaaag" alignment with "Herpes Simplex Virus [HSV]" virus reference Genome sequences
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Browse all the records for "Herpes Simplex Virus [HSV]" virus
Browse "virsi1902 " record
Length: 19
GC Content:37 %
Starting position: 60324
Strain of Virus: HSV-2
GenBank Acc: NC_001798
Transfection Reagent: TransIT-TKO
Incubation Time (Hours):24

Offtargets for "uuggaauugauugcgaaag" siRNA in Human Genome sequences
See NC_001798 at Genbank
Pubmed:16306938
Article:An siRNA-based microbicide protects mice from lethal herpes simplex virus 2 infection.
Authors:Palliser D, Chowdhury D, Wang QY, Lee SJ, Bronson RT, Knipe DM, Lieberman J.
Journal:Nature. 2006 Jan 5;439(7072):89-94. Epub 2005 Nov 23.
Entrez:16306938

siRNA sequence "uaugaaguacgucgagugg" alignment with "Herpes Simplex Virus [HSV]" virus reference Genome sequences
Sorry unable to load image
Browse all the records for "Herpes Simplex Virus [HSV]" virus
Browse "virsi1901 " record
Length: 19
GC Content:47 %
Starting position: 59715
Strain of Virus: HSV-2
GenBank Acc: NC_001798
Transfection Reagent: TransIT-TKO
Incubation Time (Hours):24

Offtargets for "uaugaaguacgucgagugg" siRNA in Human Genome sequences
See NC_001798 at Genbank
Pubmed:16306938
Article:An siRNA-based microbicide protects mice from lethal herpes simplex virus 2 infection.
Authors:Palliser D, Chowdhury D, Wang QY, Lee SJ, Bronson RT, Knipe DM, Lieberman J.
Journal:Nature. 2006 Jan 5;439(7072):89-94. Epub 2005 Nov 23.
Entrez:16306938


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1907	uuggaauugauugcgaaag	Herpes Simplex Virus [HSV]	UL29	NIH 3T3	Plaque Count	High	19154990	Blast SL	refseqs
virsi1902	uuggaauugauugcgaaag	Herpes Simplex Virus [HSV]	UL29	Vero	mRNA	82	16306938	Blast SL	refseqs
virsi1901	uaugaaguacgucgagugg	Herpes Simplex Virus [HSV]	UL29	Vero	mRNA	55	16306938	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm