VIRsiRNAdb

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• VsiRNAid

Total number of Results for Arenaviridae are 10
Results from 0 - 25

siRNA sequence "ggcccggauggucauuuaa" alignment with "Lymphocytic Choriomeningitis Virus" virus reference Genome sequences
siRNA sequence matching with "ggcccggauggucauuuaa" Lymphocytic Choriomeningitis Virus" Virus reference Genome sequences
Browse all the records for "Lymphocytic Choriomeningitis Virus" virus
Browse "virsi2303 " record
Length: 19
GC Content:53 %
GenBank Acc: NC_004291
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggcccggauggucauuuaa" siRNA in Human Genome sequences
See NC_004291 at Genbank
Pubmed:16103158
Article:RNA interference-mediated virus clearance from cells both acutely and chronically infected with the prototypic arenavirus lymphocytic choriomeningitis virus.
Authors:Sánchez AB, Perez M, Cornu T, de la Torre JC.
Journal:J Virol. 2005 Sep;79(17):11071-81.
Entrez:16103158

siRNA sequence "accuucugcugucaguauccg" alignment with "Lymphocytic Choriomeningitis Virus" virus reference Genome sequences
siRNA sequence matching with "accuucugcugucaguauccg" Lymphocytic Choriomeningitis Virus" Virus reference Genome sequences
Browse all the records for "Lymphocytic Choriomeningitis Virus" virus
Browse "virsi2304 " record
Length: 21
GC Content:52 %
GenBank Acc: NC_004291
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "accuucugcugucaguauccg" siRNA in Human Genome sequences
See NC_004291 at Genbank
Pubmed:16103158
Article:RNA interference-mediated virus clearance from cells both acutely and chronically infected with the prototypic arenavirus lymphocytic choriomeningitis virus.
Authors:Sánchez AB, Perez M, Cornu T, de la Torre JC.
Journal:J Virol. 2005 Sep;79(17):11071-81.
Entrez:16103158

siRNA sequence "aacauaaccugaugacacc" alignment with "Junin Virus" virus reference Genome sequences
siRNA sequence matching with "aacauaaccugaugacacc" Junin Virus" Virus reference Genome sequences
Browse all the records for "Junin Virus" virus
Browse "virsi2300 " record
Length: 19
GC Content:42 %
GenBank Acc: DQ538136
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "aacauaaccugaugacacc" siRNA in Human Genome sequences
See DQ538136 at Genbank
Pubmed:19591878
Article:Inhibition of Junín virus replication by small interfering RNAs.
Authors:Artuso MC, Ellenberg PC, Scolaro LA, Damonte EB, García CC.
Journal:Antiviral Res. 2009 Oct;84(1):31-7. Epub 2009 Jul 8.
Entrez:19591878

siRNA sequence "ccugauaaccugcaaugau" alignment with "Junin Virus" virus reference Genome sequences
siRNA sequence matching with "ccugauaaccugcaaugau" Junin Virus" Virus reference Genome sequences
Browse all the records for "Junin Virus" virus
Browse "virsi2299 " record
Length: 19
GC Content:42 %
GenBank Acc: DQ538136
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ccugauaaccugcaaugau" siRNA in Human Genome sequences
See DQ538136 at Genbank
Pubmed:19591878
Article:Inhibition of Junín virus replication by small interfering RNAs.
Authors:Artuso MC, Ellenberg PC, Scolaro LA, Damonte EB, García CC.
Journal:Antiviral Res. 2009 Oct;84(1):31-7. Epub 2009 Jul 8.
Entrez:19591878

siRNA sequence "cgcacaguggauccuaggc" alignment with "Lassa Virus" virus reference Genome sequences
siRNA sequence matching with "cgcacaguggauccuaggc" Lassa Virus" Virus reference Genome sequences
Browse all the records for "Lassa Virus" virus
Browse "virsi1922 " record
Length: 19
GC Content:63 %
Starting position: 1
GenBank Acc: J04324
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgcacaguggauccuaggc" siRNA in Human Genome sequences
See J04324 at Genbank
Pubmed:17371814
Article:Broad-spectrum antiviral activity of small interfering RNA targeting the conserved RNA termini of Lassa virus.
Authors:Miller S, Genther S.
Journal:Antimicrob Agents Chemother. 2007 Jun;51(6):2215-8. Epub 2007 Mar 19.
Entrez:17371814

siRNA sequence "uugcagagaucugaauucc" alignment with "Junin Virus" virus reference Genome sequences
siRNA sequence matching with "uugcagagaucugaauucc" Junin Virus" Virus reference Genome sequences
Browse all the records for "Junin Virus" virus
Browse "virsi2302 " record
Length: 19
GC Content:42 %
GenBank Acc: DQ538136
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uugcagagaucugaauucc" siRNA in Human Genome sequences
See DQ538136 at Genbank
Pubmed:19591878
Article:Inhibition of Junín virus replication by small interfering RNAs.
Authors:Artuso MC, Ellenberg PC, Scolaro LA, Damonte EB, García CC.
Journal:Antiviral Res. 2009 Oct;84(1):31-7. Epub 2009 Jul 8.
Entrez:19591878

siRNA sequence "cgcaccgaggauccuaggc" alignment with "Lassa Virus" virus reference Genome sequences
siRNA sequence matching with "cgcaccgaggauccuaggc" Lassa Virus" Virus reference Genome sequences
Browse all the records for "Lassa Virus" virus
Browse "virsi1923 " record
Length: 19
GC Content:68 %
Starting position: 1
GenBank Acc: J04331
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgcaccgaggauccuaggc" siRNA in Human Genome sequences
See J04331 at Genbank
Pubmed:17371814
Article:Broad-spectrum antiviral activity of small interfering RNA targeting the conserved RNA termini of Lassa virus.
Authors:Miller S, Genther S.
Journal:Antimicrob Agents Chemother. 2007 Jun;51(6):2215-8. Epub 2007 Mar 19.
Entrez:17371814

siRNA sequence "uaucuaccauguagacugc" alignment with "Junin Virus" virus reference Genome sequences
siRNA sequence matching with "uaucuaccauguagacugc" Junin Virus" Virus reference Genome sequences
Browse all the records for "Junin Virus" virus
Browse "virsi2301 " record
Length: 19
GC Content:42 %
GenBank Acc: DQ538136
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "uaucuaccauguagacugc" siRNA in Human Genome sequences
See DQ538136 at Genbank
Pubmed:19591878
Article:Inhibition of Junín virus replication by small interfering RNAs.
Authors:Artuso MC, Ellenberg PC, Scolaro LA, Damonte EB, García CC.
Journal:Antiviral Res. 2009 Oct;84(1):31-7. Epub 2009 Jul 8.
Entrez:19591878

siRNA sequence "cgcaccggggauccuaggc" alignment with "Lassa Virus" virus reference Genome sequences
siRNA sequence matching with "cgcaccggggauccuaggc" Lassa Virus" Virus reference Genome sequences
Browse all the records for "Lassa Virus" virus
Browse "virsi1920 " record
Length: 19
GC Content:74 %
Starting position: 1
GenBank Acc: AF246121
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgcaccggggauccuaggc" siRNA in Human Genome sequences
See AF246121 at Genbank
Pubmed:17371814
Article:Broad-spectrum antiviral activity of small interfering RNA targeting the conserved RNA termini of Lassa virus.
Authors:Miller S, Genther S.
Journal:Antimicrob Agents Chemother. 2007 Jun;51(6):2215-8. Epub 2007 Mar 19.
Entrez:17371814

siRNA sequence "cgcaccggggauccuaggc" alignment with "Lassa Virus" virus reference Genome sequences
siRNA sequence matching with "cgcaccggggauccuaggc" Lassa Virus" Virus reference Genome sequences
Browse all the records for "Lassa Virus" virus
Browse "virsi1921 " record
Length: 19
GC Content:74 %
Starting position: 1
GenBank Acc: AF246121
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "cgcaccggggauccuaggc" siRNA in Human Genome sequences
See AF246121 at Genbank
Pubmed:17371814
Article:Broad-spectrum antiviral activity of small interfering RNA targeting the conserved RNA termini of Lassa virus.
Authors:Miller S, Genther S.
Journal:Antimicrob Agents Chemother. 2007 Jun;51(6):2215-8. Epub 2007 Mar 19.
Entrez:17371814


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2303	ggcccggauggucauuuaa	Lymphocytic Choriomeningitis Virus	L	HEK 293T	Protein	High	16103158	Blast SL	refseqs
virsi2304	accuucugcugucaguauccg	Lymphocytic Choriomeningitis Virus	Z	HEK 293T	Protein	High	16103158	Blast SL	refseqs
virsi2300	aacauaaccugaugacacc	Junin Virus	Z	Vero	Viral Titer	93	19591878	Blast SL	refseqs
virsi2299	ccugauaaccugcaaugau	Junin Virus	Z	Vero	Viral Titer	85	19591878	Blast SL	refseqs
virsi1922	cgcacaguggauccuaggc	Lassa Virus	NP	BSR-T7/5	Protein	75	17371814	Blast SL	refseqs
virsi2302	uugcagagaucugaauucc	Junin Virus	Z	Vero	Viral Titer	57	19591878	Blast SL	refseqs
virsi1923	cgcaccgaggauccuaggc	Lassa Virus	L	BSR-T7/5	Protein	50	17371814	Blast SL	refseqs
virsi2301	uaucuaccauguagacugc	Junin Virus	Z	Vero	Viral Titer	50	19591878	Blast SL	refseqs
virsi1920	cgcaccggggauccuaggc	Lassa Virus	GPC	BSR-T7/5	Protein	20	17371814	Blast SL	refseqs
virsi1921	cgcaccggggauccuaggc	Lassa Virus	Z	BSR-T7/5	Protein	20	17371814	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm