VIRsiRNAdb

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• VsiRNAid

Total number of Results for Filoviridae are 8
Results from 0 - 25

siRNA sequence "gucugggcucauauuguuauu" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "gucugggcucauauuguuauu" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1926 " record
Length: 21
GC Content:38 %
Starting position: 18499
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "gucugggcucauauuguuauu" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "ggcaucagugugcucaguuga" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "ggcaucagugugcucaguuga" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1925 " record
Length: 21
GC Content:52 %
Starting position: 438
Strain of Virus: Z EBOV
GenBank Acc: J04337
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "ggcaucagugugcucaguuga" siRNA in Human Genome sequences
See J04337 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "ggcaucagugugcucaguuga" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "ggcaucagugugcucaguuga" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1924 " record
Length: 21
GC Content:52 %
Starting position: 193
Strain of Virus: Z EBOV
GenBank Acc: J04337
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "ggcaucagugugcucaguuga" siRNA in Human Genome sequences
See J04337 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "gggcucauauuguuauugaua" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "gggcucauauuguuauugaua" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1927 " record
Length: 21
GC Content:33 %
Starting position: 18503
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "gggcucauauuguuauugaua" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "cggacacacaaaaagaaag" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "cggacacacaaaaagaaag" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1928 " record
Length: 19
GC Content:42 %
Starting position: 1
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "cggacacacaaaaagaaag" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "uagagaucaugaccuugau" alignment with "Marburg Virus" virus reference Genome sequences
siRNA sequence matching with "uagagaucaugaccuugau" Marburg Virus" Virus reference Genome sequences
Browse all the records for "Marburg Virus" virus
Browse "virsi1412 " record
Length: 19
GC Content:37 %
GenBank Acc: Z12132
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uagagaucaugaccuugau" siRNA in Human Genome sequences
See Z12132 at Genbank
Pubmed:15784912
Article:Inhibition of Marburg virus protein expression and viral release by RNA interference.
Authors:Fowler T, Bamberg S, Möller P, Klenk HD, Meyer TF, Becker S, Rudel T.
Journal:J Gen Virol. 2005 Apr;86(Pt 4):1181-8.
Entrez:15784912

siRNA sequence "uaggcagauaucagacauu" alignment with "Marburg Virus" virus reference Genome sequences
siRNA sequence matching with "uaggcagauaucagacauu" Marburg Virus" Virus reference Genome sequences
Browse all the records for "Marburg Virus" virus
Browse "virsi1413 " record
Length: 19
GC Content:37 %
GenBank Acc: Z12132
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "uaggcagauaucagacauu" siRNA in Human Genome sequences
See Z12132 at Genbank
Pubmed:15784912
Article:Inhibition of Marburg virus protein expression and viral release by RNA interference.
Authors:Fowler T, Bamberg S, Möller P, Klenk HD, Meyer TF, Becker S, Rudel T.
Journal:J Gen Virol. 2005 Apr;86(Pt 4):1181-8.
Entrez:15784912

siRNA sequence "caguucucgaguucaucuu" alignment with "Marburg Virus" virus reference Genome sequences
siRNA sequence matching with "caguucucgaguucaucuu" Marburg Virus" Virus reference Genome sequences
Browse all the records for "Marburg Virus" virus
Browse "virsi1415 " record
Length: 19
GC Content:42 %
GenBank Acc: Z12132
Transfection Reagent: Lipofectamine 2000

Offtargets for "caguucucgaguucaucuu" siRNA in Human Genome sequences
See Z12132 at Genbank
Pubmed:15784912
Article:Inhibition of Marburg virus protein expression and viral release by RNA interference.
Authors:Fowler T, Bamberg S, Möller P, Klenk HD, Meyer TF, Becker S, Rudel T.
Journal:J Gen Virol. 2005 Apr;86(Pt 4):1181-8.
Entrez:15784912


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1926	gucugggcucauauuguuauu	Ebolavirus [EBOV]	ZT	293T	Protein	Medium	17940974	Blast SL	refseqs
virsi1925	ggcaucagugugcucaguuga	Ebolavirus [EBOV]	ZNP	293T	Protein	Low	17940974	Blast SL	refseqs
virsi1924	ggcaucagugugcucaguuga	Ebolavirus [EBOV]	ZNP	293T	Protein	High	17940974	Blast SL	refseqs
virsi1927	gggcucauauuguuauugaua	Ebolavirus [EBOV]	ZT	293T	Protein	High	17940974	Blast SL	refseqs
virsi1928	cggacacacaaaaagaaag	Ebolavirus [EBOV]	ZL	293T	Protein	High	17940974	Blast SL	refseqs
virsi1412	uagagaucaugaccuugau	Marburg Virus	VP30	HeLa Ccl-2	Protein	High	15784912	Blast SL	refseqs
virsi1413	uaggcagauaucagacauu	Marburg Virus	VP30	HeLa Ccl-2	Protein	High	15784912	Blast SL	refseqs
virsi1415	caguucucgaguucaucuu	Marburg Virus	NP	HeLa Ccl-2	Protein	70	15784912	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm