VIRsiRNAdb

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Total number of Results for 15848179 are 6
Results from 0 - 25

siRNA sequence "ggcaucguauggguugcaacu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ggcaucguauggguugcaacu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1366 " record
Length: 21
GC Content:52 %
Starting position: 28492
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):192

Offtargets for "ggcaucguauggguugcaacu" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179

siRNA sequence "ggcaucguauggguugcaacu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ggcaucguauggguugcaacu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1372 " record
Length: 21
GC Content:52 %
Starting position: 28492
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggcaucguauggguugcaacu" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179

siRNA sequence "ggaggaacuuagauucccu" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "ggaggaacuuagauucccu" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1371 " record
Length: 19
GC Content:47 %
Starting position: 28290
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaggaacuuagauucccu" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179

siRNA sequence "gaaauucaacuccuggcag" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gaaauucaacuccuggcag" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1369 " record
Length: 19
GC Content:47 %
Starting position: 28691
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gaaauucaacuccuggcag" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179

siRNA sequence "gucacucaagcauuugggaga" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gucacucaagcauuugggaga" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1370 " record
Length: 21
GC Content:48 %
Starting position: 28915
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gucacucaagcauuugggaga" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179

siRNA sequence "gacaaauagcgccaggaca" alignment with "SARS Coronavirus" virus reference Genome sequences
siRNA sequence matching with "gacaaauagcgccaggaca" SARS Coronavirus" Virus reference Genome sequences
Browse all the records for "SARS Coronavirus" virus
Browse "virsi1368 " record
Length: 19
GC Content:53 %
Starting position: 22660
Strain of Virus: CUHK-W1
GenBank Acc: AY278554
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gacaaauagcgccaggaca" siRNA in Human Genome sequences
See AY278554 at Genbank
Pubmed:15848179
Article:Small interfering RNA inhibits SARS-CoV nucleocapsid gene expression in cultured cells and mouse muscles.
Authors:Zhao P, Qin ZL, Ke JS, Lu Y, Liu M, Pan W, Zhao LJ, Cao J, Qi ZT.
Journal:FEBS Lett. 2005 Apr 25;579(11):2404-10.
Entrez:15848179


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1366	ggcaucguauggguugcaacu	SARS Coronavirus	N	Tissue	mRNA	83	15848179	Blast SL	refseqs
virsi1372	ggcaucguauggguugcaacu	SARS Coronavirus	N	293T	mRNA	83	15848179	Blast SL	refseqs
virsi1371	ggaggaacuuagauucccu	SARS Coronavirus	N	293T	mRNA	62	15848179	Blast SL	refseqs
virsi1369	gaaauucaacuccuggcag	SARS Coronavirus	N	293T	mRNA	54	15848179	Blast SL	refseqs
virsi1370	gucacucaagcauuugggaga	SARS Coronavirus	N	293T	mRNA	48	15848179	Blast SL	refseqs
virsi1368	gacaaauagcgccaggaca	SARS Coronavirus	Spike	293T	mRNA	3	15848179	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm