VIRsiRNAdb

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Total number of Results for 16566896 are 4
Results from 0 - 25

siRNA sequence "cccccccucccgggagagcc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cccccccucccgggagagcc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2177 " record
Length: 20
GC Content:85 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "cccccccucccgggagagcc" siRNA in Human Genome sequences
See NC_004102 at Genbank
Pubmed:16566896
Article:Inhibition of hepatitis C virus RNA replication by short hairpin RNA synthesized by T7 RNA polymerase in hepatitis C virus subgenomic replicons.
Authors:Hamazaki H, Ujino S, Miyano-Kurosaki N, Shimotohno K, Takaku H.
Journal:Biochem Biophys Res Commun. 2006 May 12;343(3):988-94. Epub 2006 Mar 29.
Entrez:16566896

siRNA sequence "agaccgugcaccaugagcac" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "agaccgugcaccaugagcac" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2179 " record
Length: 20
GC Content:60 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "agaccgugcaccaugagcac" siRNA in Human Genome sequences
See NC_004102 at Genbank
Pubmed:16566896
Article:Inhibition of hepatitis C virus RNA replication by short hairpin RNA synthesized by T7 RNA polymerase in hepatitis C virus subgenomic replicons.
Authors:Hamazaki H, Ujino S, Miyano-Kurosaki N, Shimotohno K, Takaku H.
Journal:Biochem Biophys Res Commun. 2006 May 12;343(3):988-94. Epub 2006 Mar 29.
Entrez:16566896

siRNA sequence "ccaugagcacgaauccuaaa" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ccaugagcacgaauccuaaa" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2180 " record
Length: 20
GC Content:45 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ccaugagcacgaauccuaaa" siRNA in Human Genome sequences
See NC_004102 at Genbank
Pubmed:16566896
Article:Inhibition of hepatitis C virus RNA replication by short hairpin RNA synthesized by T7 RNA polymerase in hepatitis C virus subgenomic replicons.
Authors:Hamazaki H, Ujino S, Miyano-Kurosaki N, Shimotohno K, Takaku H.
Journal:Biochem Biophys Res Commun. 2006 May 12;343(3):988-94. Epub 2006 Mar 29.
Entrez:16566896

siRNA sequence "aguguugggucgcgaaaggc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aguguugggucgcgaaaggc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2178 " record
Length: 20
GC Content:60 %
GenBank Acc: NC_004102
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aguguugggucgcgaaaggc" siRNA in Human Genome sequences
See NC_004102 at Genbank
Pubmed:16566896
Article:Inhibition of hepatitis C virus RNA replication by short hairpin RNA synthesized by T7 RNA polymerase in hepatitis C virus subgenomic replicons.
Authors:Hamazaki H, Ujino S, Miyano-Kurosaki N, Shimotohno K, Takaku H.
Journal:Biochem Biophys Res Commun. 2006 May 12;343(3):988-94. Epub 2006 Mar 29.
Entrez:16566896


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2177	cccccccucccgggagagcc	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	90	16566896	Blast SL	refseqs
virsi2179	agaccgugcaccaugagcac	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	90	16566896	Blast SL	refseqs
virsi2180	ccaugagcacgaauccuaaa	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	90	16566896	Blast SL	refseqs
virsi2178	aguguugggucgcgaaaggc	Hepatitis C Virus [HCV]	C	Huh-7	mRNA	80	16566896	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm