VIRsiRNAdb

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Total number of Results for 17940974 are 5
Results from 0 - 25

siRNA sequence "gucugggcucauauuguuauu" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "gucugggcucauauuguuauu" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1926 " record
Length: 21
GC Content:38 %
Starting position: 18499
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "gucugggcucauauuguuauu" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "ggcaucagugugcucaguuga" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "ggcaucagugugcucaguuga" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1925 " record
Length: 21
GC Content:52 %
Starting position: 438
Strain of Virus: Z EBOV
GenBank Acc: J04337
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "ggcaucagugugcucaguuga" siRNA in Human Genome sequences
See J04337 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "ggcaucagugugcucaguuga" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "ggcaucagugugcucaguuga" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1924 " record
Length: 21
GC Content:52 %
Starting position: 193
Strain of Virus: Z EBOV
GenBank Acc: J04337
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "ggcaucagugugcucaguuga" siRNA in Human Genome sequences
See J04337 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "gggcucauauuguuauugaua" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "gggcucauauuguuauugaua" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1927 " record
Length: 21
GC Content:33 %
Starting position: 18503
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "gggcucauauuguuauugaua" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974

siRNA sequence "cggacacacaaaaagaaag" alignment with "Ebolavirus [EBOV]" virus reference Genome sequences
siRNA sequence matching with "cggacacacaaaaagaaag" Ebolavirus [EBOV]" Virus reference Genome sequences
Browse all the records for "Ebolavirus [EBOV]" virus
Browse "virsi1928 " record
Length: 19
GC Content:42 %
Starting position: 1
Strain of Virus: Z EBOV
GenBank Acc: EU224440
Transfection Reagent: TransIT-LT1
Incubation Time (Hours):48

Offtargets for "cggacacacaaaaagaaag" siRNA in Human Genome sequences
See EU224440 at Genbank
Pubmed:17940974
Article:In vitro evaluation of antisense RNA efficacy against filovirus infection, by use of reverse genetics.
Authors:Groseth A, Hoenen T, Alimonti JB, Zielecki F, Ebihara H, Theriault S, Ströher U, Becker S, Feldmann H.
Journal:J Infect Dis. 2007 Nov 15;196 Suppl 2:S382-9.
Entrez:17940974


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1926	gucugggcucauauuguuauu	Ebolavirus [EBOV]	ZT	293T	Protein	Medium	17940974	Blast SL	refseqs
virsi1925	ggcaucagugugcucaguuga	Ebolavirus [EBOV]	ZNP	293T	Protein	Low	17940974	Blast SL	refseqs
virsi1924	ggcaucagugugcucaguuga	Ebolavirus [EBOV]	ZNP	293T	Protein	High	17940974	Blast SL	refseqs
virsi1927	gggcucauauuguuauugaua	Ebolavirus [EBOV]	ZT	293T	Protein	High	17940974	Blast SL	refseqs
virsi1928	cggacacacaaaaagaaag	Ebolavirus [EBOV]	ZL	293T	Protein	High	17940974	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm