VIRsiRNAdb

Browse BY

• Family of Virus


• Virus Name


• Gene Name


• Pubmed Id


• VsiRNAid

Total number of Results for 19135091 are 10
Results from 0 - 25

siRNA sequence "uuagugguguuaguguaaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "uuagugguguuaguguaaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2200 " record
Length: 19
GC Content:32 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "uuagugguguuaguguaaa" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "agagguccgcaguuauugc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "agagguccgcaguuauugc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2197 " record
Length: 19
GC Content:53 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "agagguccgcaguuauugc" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "aaagcacucuagcgaacaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "aaagcacucuagcgaacaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2199 " record
Length: 19
GC Content:42 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "aaagcacucuagcgaacaa" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "ugaccucaauaaacguuca" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "ugaccucaauaaacguuca" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2198 " record
Length: 19
GC Content:37 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "ugaccucaauaaacguuca" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "ccgcgaagugauccaugua" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "ccgcgaagugauccaugua" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2201 " record
Length: 19
GC Content:53 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "ccgcgaagugauccaugua" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "agagccauuugguucaugu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "agagccauuugguucaugu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2205 " record
Length: 19
GC Content:42 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "agagccauuugguucaugu" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "uuauggcaauggagucaua" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "uuauggcaauggagucaua" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2196 " record
Length: 19
GC Content:37 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "uuauggcaauggagucaua" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "acaaacaaacagcgaugaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "acaaacaaacagcgaugaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2203 " record
Length: 19
GC Content:37 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "acaaacaaacagcgaugaa" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "gcugcgugacuaucauguc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gcugcgugacuaucauguc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2204 " record
Length: 19
GC Content:53 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "gcugcgugacuaucauguc" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091

siRNA sequence "gaacggcugucaagaacaa" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gaacggcugucaagaacaa" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi2202 " record
Length: 19
GC Content:47 %
Strain of Virus: Isolate 2741
GenBank Acc: AF206518
Incubation Time (Hours):24

Offtargets for "gaacggcugucaagaacaa" siRNA in Human Genome sequences
See AF206518 at Genbank
Pubmed:19135091
Article:Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.
Authors:Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.
Journal:Antiviral Res. 2009 Jun;82(3):166-8. Epub 2009 Jan 7.
Entrez:19135091


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2200	uuagugguguuaguguaaa	West Nile Virus [WNV]	3'UTR	Vero	mRNA	95	19135091	Blast SL	refseqs
virsi2197	agagguccgcaguuauugc	West Nile Virus [WNV]	E	Vero	mRNA	90	19135091	Blast SL	refseqs
virsi2199	aaagcacucuagcgaacaa	West Nile Virus [WNV]	Prm/M	Vero	mRNA	90	19135091	Blast SL	refseqs
virsi2198	ugaccucaauaaacguuca	West Nile Virus [WNV]	NS4A/B	Vero	mRNA	85	19135091	Blast SL	refseqs
virsi2201	ccgcgaagugauccaugua	West Nile Virus [WNV]	3'UTR	Vero	mRNA	85	19135091	Blast SL	refseqs
virsi2205	agagccauuugguucaugu	West Nile Virus [WNV]	NS5	Vero	mRNA	75	19135091	Blast SL	refseqs
virsi2196	uuauggcaauggagucaua	West Nile Virus [WNV]	NS3	Vero	mRNA	70	19135091	Blast SL	refseqs
virsi2203	acaaacaaacagcgaugaa	West Nile Virus [WNV]	C	Vero	mRNA	60	19135091	Blast SL	refseqs
virsi2204	gcugcgugacuaucauguc	West Nile Virus [WNV]	E	Vero	mRNA	60	19135091	Blast SL	refseqs
virsi2202	gaacggcugucaagaacaa	West Nile Virus [WNV]	NS1	Vero	mRNA	30	19135091	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm