siTarConserve

Check the conservation of user provided siRNA sequence against selected reference viral genome sequences.

Select virus/family reference genome Database All Families Arenaviridae_52 Bunyaviridae_87 Coronaviridae_33 Filoviridae_6 Flaviviridae_53 Hepadnaviridae_8 Hepeviridae_165 Herpesviridae_46 Orthomyxoviridae_69 Papillomaviridae_90 Paramyxoviridae_33 Parvoviridae_58 Picornaviridae_63 Polyomaviridae_26 Poxviridae_27 Reoviridae_459 Rhabdoviridae_68 Togaviridae_17 BK_Polymavirus_267 Chikungunya_Virus_75 Dengue_2908 Ebolavirus_13 ENCEPHALO_17 Enterovirus_264 EBV_5 HIV_1804 HAZARA_1 Hepatitis_A_Virus_59 Hepatitis_B_Virus_2601 Hepatitis_C_Virus_908 Hepatitis_Delta_virus_135 Hepatitis_E_Virus_164 Hepatitis_A+B+C+D+E_Virus_3866 Herpes_simplex_Virus_40 Human_Coxsackievirus_[CV]_468 Human Metapneumo_8 Human Papillomavirus_11 Human_Respiratory_Syncytial_Virus_10 Rotavirus Human_Rhinovirus_138 Influenza_A_Virus_40 Influenza_B_Virus_3 Influenza_C_Virus_138 Japanese_Encephalitis_Virus_77 John Cunningham Virus_436 Junin_Virus_17 La_Crosse_Virus_54 Lassa_Virus_19 Marburg Virus_20 Measles_Virus_44 Nipavirus_8 Polio_153 Rabies_43 Reovirus_126 Rotavirus_3918 SARS Coronavirus_251 Sendai_Virus_21 Semliki_Forest_Virus_7 Sindbis_Virus_7 St._Louis_Encephalitis_Virus_6 Vaccinia_Virus_23 Variola_virus_49 West Nile Virus_512 Yellow_Fever_Virus_25 All 4969 unique Viruses      
Or load your target sequences from disk           
Select BLAST or Smith-Waterman alignment algorithm                       Blast Smith Waterman

Enter sequence below in FASTA format

Example: >XYZ acagcatattgacacctgg

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Expect 0.0001 0.01 1 10 100 1000   

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