VIRmiRNA -A database of viral miRNA
VMR_0316 details

miRNA Id:VMR_0316
Virus:Herpes simplex virus 1 (HSV1)
Taxonomy:View
Nomenclature:hsv1-miR-h7*
miRNA Sequence: uuuggaucccgaccccucuuc
Length: 21
Predicted secondary structure (UNAfold):
GC Content (%):57.14
pre-miRNA:hsv1-mir-h7
pre-miRNA Sequence:gaagaggggggagaaaggggucugcaaccaaagguggucuggguccguccuuuggaucccgaccccucuucuucccucuucuc
Arm: 3p
Cell line: HEK293, Vero cells
Method:Solexa(NGS)
Reference: 20181707, 19656888
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed