miRNA Id: | VMR_0333 |
Virus: | Herpes simplex virus 2 (HSV2) |
Taxonomy: | View |
Nomenclature: | hsv2-miR-h3 |
miRNA Sequence: | uuugggagucugcgguugggag |
Length: | 22 |
Predicted secondary structure (UNAfold): | |
GC Content (%): | 59.09 |
pre-miRNA: | hsv2-mir-h3 |
pre-miRNA Sequence: | agcgaggacgcggccggcgcgcucucgaccgcgguucccgagucguacgcagggaccauuugggagucugcgguugggagcgcgccggggcgcggcacggcu |
Arm: | 3p |
Cell line: | HEK293, Vero cells |
Method: | Solexa(NGS), 454 |
Reference: | 20181707, 19019961 |
BLAST (miRBase): | 8mer seed | 7mer seed |
BLAST (VIRmiRNA): | 8mer seed | 7mer seed |
Align (miRBase): | 8mer seed | 7mer seed |
Align (VIRmiRNA): | 8mer seed | 7mer seed |
Align (Human genes): | 8mer seed | 7mer seed |