VIRmiRNA -A database of viral miRNA
VMR_0333 details

miRNA Id:VMR_0333
Virus:Herpes simplex virus 2 (HSV2)
Taxonomy:View
Nomenclature:hsv2-miR-h3
miRNA Sequence: uuugggagucugcgguugggag
Length: 22
Predicted secondary structure (UNAfold):
GC Content (%):59.09
pre-miRNA:hsv2-mir-h3
pre-miRNA Sequence:agcgaggacgcggccggcgcgcucucgaccgcgguucccgagucguacgcagggaccauuugggagucugcgguugggagcgcgccggggcgcggcacggcu
Arm: 3p
Cell line: HEK293, Vero cells
Method:Solexa(NGS), 454
Reference: 20181707, 19019961
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed