VIRmiRNA -A database of viral miRNA
VMR_0400 details

miRNA Id:VMR_0400
Virus:Kaposi sarcoma-associated herpesvirus (KSHV)
Taxonomy:View
Nomenclature:kshv-miR-k12-12*
miRNA Sequence: aaccaggccaccauuccucuccg
Length: 23
Predicted secondary structure (UNAfold):
GC Content (%):60.87
pre-miRNA:kshv-mir-k12-12
pre-miRNA Sequence:gauggccggcacgcggugucaaccaggccaccauuccucuccgcauuaaagcacucggugggggagggugcccugguugacacaaugugccgcgcauc
Arm: 5p
Cell line: BCBL1 cells
Method:Cloned
Reference: 16540699, 19889781, 20566670
BLAST (miRBase): 8mer seed | 7mer seed
BLAST (VIRmiRNA): 8mer seed | 7mer seed
Align (miRBase): 8mer seed | 7mer seed
Align (VIRmiRNA): 8mer seed | 7mer seed
Align (Human genes): 8mer seed | 7mer seed