VIRsiRNAdb

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• VsiRNAid

Total number of Results for 1C are 4
Results from 0 - 25

siRNA sequence "guacagguaagaugcucau" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guacagguaagaugcucau" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1278 " record
Length: 19
GC Content:42 %
Starting position: 380
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guacagguaagaugcucau" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcaucauaaccauauggua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcaucauaaccauauggua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1275 " record
Length: 19
GC Content:37 %
Starting position: 575
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcaucauaaccauauggua" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "ggacaacuucacuaugaaa" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggacaacuucacuaugaaa" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1276 " record
Length: 19
GC Content:37 %
Starting position: 663
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggacaacuucacuaugaaa" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcacuacagcauacaucgu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcacuacagcauacaucgu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1279 " record
Length: 19
GC Content:47 %
Starting position: 626
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcacuacagcauacaucgu" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1278	guacagguaagaugcucau	Human Coxsackievirus [CV]	1C	293T	mRNA	83	18662724	Blast SL	refseqs
virsi1275	gcaucauaaccauauggua	Human Coxsackievirus [CV]	1C	293T	mRNA	81	18662724	Blast SL	refseqs
virsi1276	ggacaacuucacuaugaaa	Human Coxsackievirus [CV]	1C	293T	mRNA	73	18662724	Blast SL	refseqs
virsi1279	gcacuacagcauacaucgu	Human Coxsackievirus [CV]	1C	293T	mRNA	61	18662724	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm