VIRsiRNAdb

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Total number of Results for 2C are 13
Results from 0 - 25

siRNA sequence "ggaagagaaaggagugucu" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggaagagaaaggagugucu" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1262 " record
Length: 19
GC Content:47 %
Starting position: 618
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaagagaaaggagugucu" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "cucuucagauccgcaaaca" alignment with "Human Rhinovirus" virus reference Genome sequences
siRNA sequence matching with "cucuucagauccgcaaaca" Human Rhinovirus" Virus reference Genome sequences
Browse all the records for "Human Rhinovirus" virus
Browse "virsi2036 " record
Length: 19
GC Content:47 %
GenBank Acc: L24917
Transfection Reagent: Oligofectamine
Incubation Time (Hours):72

Offtargets for "cucuucagauccgcaaaca" siRNA in Human Genome sequences
See L24917 at Genbank
Pubmed:14670593
Article:Small interfering RNA molecules as potential anti-human rhinovirus agents: in vitro potency, specificity, and mechanism.
Authors:Phipps KM, Martinez A, Lu J, Heinz BA, Zhao G.
Journal:Antiviral Res. 2004 Jan;61(1):49-55.
Entrez:14670593

siRNA sequence "ggaaaggacaugucucuau" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggaaaggacaugucucuau" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1264 " record
Length: 19
GC Content:42 %
Starting position: 550
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaaaggacaugucucuau" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gcaucaaccaaugcuagua" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "gcaucaaccaaugcuagua" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1263 " record
Length: 19
GC Content:42 %
Starting position: 658
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "gcaucaaccaaugcuagua" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "ggaugaacaacuacaugca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "ggaugaacaacuacaugca" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1266 " record
Length: 19
GC Content:42 %
Starting position: 320
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "ggaugaacaacuacaugca" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "gaaccagaucacgaacuuggagcaguccg" alignment with "Enterovirus [EV]" virus reference Genome sequences
siRNA sequence matching with "gaaccagaucacgaacuuggagcaguccg" Enterovirus [EV]" Virus reference Genome sequences
Browse all the records for "Enterovirus [EV]" virus
Browse "virsi1779 " record
Length: 29
GC Content:55 %
Starting position: 4250
Strain of Virus: EV71 Strain 5865/SIN/00009
GenBank Acc: AF316321
Transfection Reagent: Lipofectamine 2000CD
Incubation Time (Hours):48

Offtargets for "gaaccagaucacgaacuuggagcaguccg" siRNA in Human Genome sequences
See AF316321 at Genbank
Pubmed:17316836
Article:Enhanced potency and efficacy of 29-mer shRNAs in inhibition of Enterovirus 71.
Authors:Tan EL, Tan TM, Chow VT, Poh CL.
Journal:Antiviral Res. 2007 Apr;74(1):9-15. Epub 2007 Jan 31.
Entrez:17316836

siRNA sequence "guuggagaaccaaaucuca" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
siRNA sequence matching with "guuggagaaccaaaucuca" Human Coxsackievirus [CV]" Virus reference Genome sequences
Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi1265 " record
Length: 19
GC Content:42 %
Starting position: 165
Strain of Virus: Shzh05-1
GenBank Acc: EU262658
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "guuggagaaccaaaucuca" siRNA in Human Genome sequences
See EU262658 at Genbank
Pubmed:18662724
Article:Quick identification of effective small interfering RNAs that inhibit the replication of coxsackievirus A16.
Authors:Wu Z, Gao Y, Sun L, Tien P, Jin Q.
Journal:Antiviral Res. 2008 Dec;80(3):295-301. Epub 2008 Jul 26.
Entrez:18662724

siRNA sequence "cagagcagcugauacuaac" alignment with "Human Rhinovirus" virus reference Genome sequences
siRNA sequence matching with "cagagcagcugauacuaac" Human Rhinovirus" Virus reference Genome sequences
Browse all the records for "Human Rhinovirus" virus
Browse "virsi2037 " record
Length: 19
GC Content:47 %
GenBank Acc: L24917
Transfection Reagent: Oligofectamine
Incubation Time (Hours):72

Offtargets for "cagagcagcugauacuaac" siRNA in Human Genome sequences
See L24917 at Genbank
Pubmed:14670593
Article:Small interfering RNA molecules as potential anti-human rhinovirus agents: in vitro potency, specificity, and mechanism.
Authors:Phipps KM, Martinez A, Lu J, Heinz BA, Zhao G.
Journal:Antiviral Res. 2004 Jan;61(1):49-55.
Entrez:14670593

siRNA sequence "gguugaaguuaaaccugcu" alignment with "Hepatitis A Virus [HAV]" virus reference Genome sequences
siRNA sequence matching with "gguugaaguuaaaccugcu" Hepatitis A Virus [HAV]" Virus reference Genome sequences
Browse all the records for "Hepatitis A Virus [HAV]" virus
Browse "virsi1010 " record
Length: 19
GC Content:42 %
Starting position: 4765
Strain of Virus: HM175
GenBank Acc: M59808
Transfection Reagent: TransMessenger
Incubation Time (Hours):48

Offtargets for "gguugaaguuaaaccugcu" siRNA in Human Genome sequences
See M59808 at Genbank
Pubmed:15120607
Article:Interference of hepatitis A virus replication by small interfering RNAs.
Authors:Kanda T, Kusov Y, Yokosuka O, Gauss-MÃŒller V.
Journal:Biochem Biophys Res Commun. 2004 May 28;318(2):341-5.
Entrez:15120607

siRNA sequence "aaccagaucacgaacuugg" alignment with "Enterovirus [EV]" virus reference Genome sequences
siRNA sequence matching with "aaccagaucacgaacuugg" Enterovirus [EV]" Virus reference Genome sequences
Browse all the records for "Enterovirus [EV]" virus
Browse "virsi1783 " record
Length: 19
GC Content:47 %
Starting position: 4251
Strain of Virus: EV71 (5865/Sin/000009)
GenBank Acc: AF316321
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):48

Offtargets for "aaccagaucacgaacuugg" siRNA in Human Genome sequences
See AF316321 at Genbank
Pubmed:16083932
Article:RNA interference against enterovirus 71 infection.
Authors:Sim AC, Luhur A, Tan TM, Chow VT, Poh CL.
Journal:Virology. 2005 Oct 10;341(1):72-9.
Entrez:16083932

siRNA sequence "aucacucacucuuggcacc" alignment with "Human Rhinovirus" virus reference Genome sequences
siRNA sequence matching with "aucacucacucuuggcacc" Human Rhinovirus" Virus reference Genome sequences
Browse all the records for "Human Rhinovirus" virus
Browse "virsi2038 " record
Length: 19
GC Content:53 %
GenBank Acc: L24917
Transfection Reagent: Oligofectamine
Incubation Time (Hours):72

Offtargets for "aucacucacucuuggcacc" siRNA in Human Genome sequences
See L24917 at Genbank
Pubmed:14670593
Article:Small interfering RNA molecules as potential anti-human rhinovirus agents: in vitro potency, specificity, and mechanism.
Authors:Phipps KM, Martinez A, Lu J, Heinz BA, Zhao G.
Journal:Antiviral Res. 2004 Jan;61(1):49-55.
Entrez:14670593

siRNA sequence "ggaacagaagagcgaacau" alignment with "Human Coxsackievirus [CV]" virus reference Genome sequences
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Browse all the records for "Human Coxsackievirus [CV]" virus
Browse "virsi3004 " record
Length: 19
GC Content:47 %
Starting position: 5085
GenBank Acc: D90547
Transfection Reagent: Oligofectamine

Offtargets for "ggaacagaagagcgaacau" siRNA in Human Genome sequences
See D90547 at Genbank
Pubmed:18793610
Article:Antiviral potency of a siRNA targeting a conserved region of coxsackievirus A24.
Authors:Jun EJ, Nam YR, Ahn J, Tchah H, Joo CH, Jee Y, Kim YK,Lee H.
Journal:Biochem Biophys Res Commun. 2008 Nov 14;376(2):389-94. Epub 2008 Sep 13.
Entrez:18793610

siRNA sequence "ugauauguugaauguuaau" alignment with "Hepatitis A Virus [HAV]" virus reference Genome sequences
siRNA sequence matching with "ugauauguugaauguuaau" Hepatitis A Virus [HAV]" Virus reference Genome sequences
Browse all the records for "Hepatitis A Virus [HAV]" virus
Browse "virsi1011 " record
Length: 19
GC Content:21 %
Starting position: 4807
Strain of Virus: HM175
GenBank Acc: M59808
Transfection Reagent: TransMessenger
Incubation Time (Hours):48

Offtargets for "ugauauguugaauguuaau" siRNA in Human Genome sequences
See M59808 at Genbank
Pubmed:15120607
Article:Interference of hepatitis A virus replication by small interfering RNAs.
Authors:Kanda T, Kusov Y, Yokosuka O, Gauss-MÃŒller V.
Journal:Biochem Biophys Res Commun. 2004 May 28;318(2):341-5.
Entrez:15120607


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1262	ggaagagaaaggagugucu	Human Coxsackievirus [CV]	2C	293T	mRNA	93	18662724	Blast SL	refseqs
virsi2036	cucuucagauccgcaaaca	Human Rhinovirus	2C	HeLa	Plaque Count	90	14670593	Blast SL	refseqs
virsi1264	ggaaaggacaugucucuau	Human Coxsackievirus [CV]	2C	293T	mRNA	89	18662724	Blast SL	refseqs
virsi1263	gcaucaaccaaugcuagua	Human Coxsackievirus [CV]	2C	293T	mRNA	87	18662724	Blast SL	refseqs
virsi1266	ggaugaacaacuacaugca	Human Coxsackievirus [CV]	2C	293T	mRNA	87	18662724	Blast SL	refseqs
virsi1779	gaaccagaucacgaacuuggagcaguccg	Enterovirus [EV]	2C	RD	Protein	87	17316836	Blast SL	refseqs
virsi1265	guuggagaaccaaaucuca	Human Coxsackievirus [CV]	2C	293T	mRNA	85	18662724	Blast SL	refseqs
virsi2037	cagagcagcugauacuaac	Human Rhinovirus	2C	HeLa	Plaque Count	80	14670593	Blast SL	refseqs
virsi1010	gguugaaguuaaaccugcu	Hepatitis A Virus [HAV]	2C	Huh-T7	Protein	75	15120607	Blast SL	refseqs
virsi1783	aaccagaucacgaacuugg	Enterovirus [EV]	2C	RD	RNA	54	16083932	Blast SL	refseqs
virsi2038	aucacucacucuuggcacc	Human Rhinovirus	2C	HeLa	Plaque Count	49	14670593	Blast SL	refseqs
virsi3004	ggaacagaagagcgaacau	Human Coxsackievirus [CV]	2C	HeLa	Viral Titer	25	18793610	Blast SL	refseqs
virsi1011	ugauauguugaauguuaau	Hepatitis A Virus [HAV]	2C	Huh-T7	Protein	0	15120607	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm