VIRsiRNAdb

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• VsiRNAid

Total number of Results for IRES (5\'UTR) are 3
Results from 0 - 25

siRNA sequence "gguacccagaaauuugggcg" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "gguacccagaaauuugggcg" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2219 " record
Length: 20
GC Content:55 %
Strain of Virus: 3a
GenBank Acc: EU266536
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "gguacccagaaauuugggcg" siRNA in Human Genome sequences
See EU266536 at Genbank
Pubmed:21569449
Article:Down-regulation of IRES containing 5'UTR of HCV genotype 3a using siRNAs.
Authors:Khaliq S, Jahan S, Pervaiz A, Ali Ashfaq U, Hassan S.
Journal:Virol J. 2011 May 13;8:221.
Entrez:21569449

siRNA sequence "ggucgcuggggugaccggguc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggucgcuggggugaccggguc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2218 " record
Length: 21
GC Content:76 %
Strain of Virus: 3a
GenBank Acc: EU266536
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggucgcuggggugaccggguc" siRNA in Human Genome sequences
See EU266536 at Genbank
Pubmed:21569449
Article:Down-regulation of IRES containing 5'UTR of HCV genotype 3a using siRNAs.
Authors:Khaliq S, Jahan S, Pervaiz A, Ali Ashfaq U, Hassan S.
Journal:Virol J. 2011 May 13;8:221.
Entrez:21569449

siRNA sequence "ggaggccuugugguacugcc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "ggaggccuugugguacugcc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2220 " record
Length: 20
GC Content:65 %
Strain of Virus: 3a
GenBank Acc: EU266536
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):24

Offtargets for "ggaggccuugugguacugcc" siRNA in Human Genome sequences
See EU266536 at Genbank
Pubmed:21569449
Article:Down-regulation of IRES containing 5'UTR of HCV genotype 3a using siRNAs.
Authors:Khaliq S, Jahan S, Pervaiz A, Ali Ashfaq U, Hassan S.
Journal:Virol J. 2011 May 13;8:221.
Entrez:21569449


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi2219	gguacccagaaauuugggcg	Hepatitis C Virus [HCV]	IRES (5'UTR)	Huh-7	mRNA	71	21569449	Blast SL	refseqs
virsi2218	ggucgcuggggugaccggguc	Hepatitis C Virus [HCV]	IRES (5'UTR)	Huh-7	mRNA	67	21569449	Blast SL	refseqs
virsi2220	ggaggccuugugguacugcc	Hepatitis C Virus [HCV]	IRES (5'UTR)	Huh-7	mRNA	62	21569449	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm