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- Family of Virus
- Virus Name
- Gene Name
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- VsiRNAid
Total number of Results for NS4B are 6
Results from 0 - 25
siRNA sequence "guggaagucaucacgaagc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "guggaagucaucacgaagc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1104 " record
Length: 19
GC Content:53 %
Starting position: 6349
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Starting position: 6349
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Offtargets for "guggaagucaucacgaagc" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
siRNA sequence "cauacccuccuguuuaacauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cauacccuccuguuuaacauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1983 " record
Length: 21
GC Content:43 %
Starting position: 4150
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48
Length: 21
GC Content:43 %
Starting position: 4150
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48
Offtargets for "cauacccuccuguuuaacauc" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349
siRNA sequence "gacggugaugugauugggcu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gacggugaugugauugggcu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1102 " record
Length: 20
GC Content:55 %
Starting position: 5039
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Length: 20
GC Content:55 %
Starting position: 5039
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Offtargets for "gacggugaugugauugggcu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
siRNA sequence "gcagcaagagguuacauuu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gcagcaagagguuacauuu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1103 " record
Length: 19
GC Content:42 %
Starting position: 5497
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Length: 19
GC Content:42 %
Starting position: 5497
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Offtargets for "gcagcaagagguuacauuu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
siRNA sequence "caacgagauggguuggcua" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "caacgagauggguuggcua" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1105 " record
Length: 19
GC Content:53 %
Starting position: 6915
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Length: 19
GC Content:53 %
Starting position: 6915
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48
Offtargets for "caacgagauggguuggcua" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182
siRNA sequence "aaaggacguccggaaccuauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaaggacguccggaaccuauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2140 " record
Length: 21
GC Content:52 %
Starting position: 11048
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72
Length: 21
GC Content:52 %
Starting position: 11048
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72
Offtargets for "aaaggacguccggaaccuauc" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254
| VIRsiRNAid | siRNA Sequence |  Virus_Name | Target Region | Cell Line | Test Object | Efficacy | PMID | Offtarget | Align With | ALIGN0 Result |
|---|---|---|---|---|---|---|---|---|---|---|
| virsi1104 | guggaagucaucacgaagc | West Nile Virus [WNV] |  SL | refseqs |  | |||||
| virsi1983 | cauacccuccuguuuaacauc | Hepatitis C Virus [HCV] |  SL | refseqs |  | |||||
| virsi1102 | gacggugaugugauugggcu | West Nile Virus [WNV] | SL | refseqs |  | |||||
| virsi1103 | gcagcaagagguuacauuu | West Nile Virus [WNV] | SL | refseqs |  | |||||
| virsi1105 | caacgagauggguuggcua | West Nile Virus [WNV] | SL | refseqs |  | |||||
| virsi2140 | aaaggacguccggaaccuauc | Hepatitis C Virus [HCV] | SL | refseqs |  |
: siRNA specific for both strands
: siRNA specific for only one strands: siRNA Not specific SL: siRNA seedlocator algorithm