VIRsiRNAdb

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• VsiRNAid

Total number of Results for NS4B are 6
Results from 0 - 25

siRNA sequence "guggaagucaucacgaagc" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "guggaagucaucacgaagc" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1104 " record
Length: 19
GC Content:53 %
Starting position: 6349
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "guggaagucaucacgaagc" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "cauacccuccuguuuaacauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "cauacccuccuguuuaacauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi1983 " record
Length: 21
GC Content:43 %
Starting position: 4150
Strain of Virus: Genotype 1b
GenBank Acc: AJ242654
Transfection Reagent: RNAiMAX
Incubation Time (Hours):48

Offtargets for "cauacccuccuguuuaacauc" siRNA in Human Genome sequences
See AJ242654 at Genbank
Pubmed:20534349
Article:The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.
Authors:Sagan SM, Nasheri N, Luebbert C, Pezacki JP.
Journal:Chem Biol. 2010 May 28;17(5):515-27.
Entrez:20534349

siRNA sequence "gacggugaugugauugggcu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gacggugaugugauugggcu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1102 " record
Length: 20
GC Content:55 %
Starting position: 5039
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gacggugaugugauugggcu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "gcagcaagagguuacauuu" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "gcagcaagagguuacauuu" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1103 " record
Length: 19
GC Content:42 %
Starting position: 5497
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "gcagcaagagguuacauuu" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "caacgagauggguuggcua" alignment with "West Nile Virus [WNV]" virus reference Genome sequences
siRNA sequence matching with "caacgagauggguuggcua" West Nile Virus [WNV]" Virus reference Genome sequences
Browse all the records for "West Nile Virus [WNV]" virus
Browse "virsi1105 " record
Length: 19
GC Content:53 %
Starting position: 6915
Strain of Virus: Linage
GenBank Acc: DQ211652
Transfection Reagent: Lipid-Based Reagent/Electroporation
Incubation Time (Hours):48

Offtargets for "caacgagauggguuggcua" siRNA in Human Genome sequences
See DQ211652 at Genbank
Pubmed:15985182
Article:Actively replicating West Nile virus is resistant to cytoplasmic delivery of siRNA.
Authors:Geiss BJ, Pierson TC, Diamond MS.
Journal:Virol J. 2005 Jun 28;2:53.
Entrez:15985182

siRNA sequence "aaaggacguccggaaccuauc" alignment with "Hepatitis C Virus [HCV]" virus reference Genome sequences
siRNA sequence matching with "aaaggacguccggaaccuauc" Hepatitis C Virus [HCV]" Virus reference Genome sequences
Browse all the records for "Hepatitis C Virus [HCV]" virus
Browse "virsi2140 " record
Length: 21
GC Content:52 %
Starting position: 11048
Strain of Virus: Isolate Con1
GenBank Acc: AJ238799
Transfection Reagent: Lipofectamine 2000
Incubation Time (Hours):72

Offtargets for "aaaggacguccggaaccuauc" siRNA in Human Genome sequences
See AJ238799 at Genbank
Pubmed:16979254
Article:Inhibition of hepatitis C virus gene expression by small interfering RNAs using a tri-cistronic full-length viral replicon and a transient mouse model.
Authors:Kim M, Shin D, Kim SI, Park M.
Journal:Virus Res. 2006 Dec;122(1-2):1-10. Epub 2006 Sep 15.
Entrez:16979254


VIRsiRNAid	siRNA Sequence	Virus_Name	Target Region	Cell Line	Test Object	Efficacy	PMID	Offtarget	Align With	ALIGN0 Result
virsi1104	guggaagucaucacgaagc	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Medium	15985182	Blast SL	refseqs
virsi1983	cauacccuccuguuuaacauc	Hepatitis C Virus [HCV]	NS4B	Huh-7	RNA	Low	20534349	Blast SL	refseqs
virsi1102	gacggugaugugauugggcu	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1103	gcagcaagagguuacauuu	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi1105	caacgagauggguuggcua	West Nile Virus [WNV]	NS4B	Huh-7 .5	Protein	Low	15985182	Blast SL	refseqs
virsi2140	aaaggacguccggaaccuauc	Hepatitis C Virus [HCV]	NS4B	Huh-7	RNA	30	16979254	Blast SL	refseqs



: siRNA specific for both strands
: siRNA specific for only one strands
: siRNA Not specific
SL: siRNA seedlocator algorithm