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Agrewala, J N and Brown, Deborah M and Lepak, M.M. and Duso, D. and Huston, Gail and Swain, S.L. (2007) Unique Ability of Activated CD4+ T Cells but Not Rested Effectors to Migrate to Non-lymphoid Sites in the Absence of Inflammation. Journal of Biological Chemistry, 282. pp. 6106-6115. ISSN 00219258
Ahmed, Shubbir (2007) Probing Subtle Facets of the Sequence-structure Relationships: Folding and Stability Studies of Sequence-Redesigned Proteins. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Alam, Md Suhail and Garg, Saurabh K and Agrawal, Pushpa (2007) Molecular function of WhiB4/Rv3681c of Mycobacterium tuberculosis H37Rv: a [4Fe-4S] cluster co-ordinating protein disulphide reductase. Molecular microbiology, 63 (5). pp. 1414-31. ISSN 0950-382X
Andrianifahanana, Mahefatiana and Singh, A P and Nemos, C and Ponnusamy, M P and Moniaux, N and Mehta, P P and Varshney, Grish C and Batra, S K (2007) IFN-gamma-induced expression of MUC4 in pancreatic cancer cells is mediated by STAT-1 upregulation: a novel mechanism for IFN-gamma response. Oncogene, 26 (51). pp. 7251-61. ISSN 0950-9232
Bachhawat, N and Singh, Balvinder (2007) Mycobacterial PE_PGRS proteins contain calcium-binding motifs with parallel beta-roll folds. Genomics, proteomics & bioinformatics / Beijing Genomics Institute, 5 (3-4). pp. 236-41. ISSN 1672-0229
Bhardwaj, S. and Sutar, R. and Bachhawat, Anand K and Singhi, Sunit and Chakrabarti, Arunaloke (2007) PCR-based identification and strain typing of Pichia anomala using the ribosomal intergenic spacer region IGS1. Journal of Medical Microbiology, 56 (2). pp. 185-189. ISSN 0022-2615
Bhardwaj, Sonia and Shukla, Anshuman and Mukherjee, Sourav and Sharma, Swati and Guptasarma, Purnananda and Chakraborti, Asit K and Chakrabarti, Arunaloke (2007) Putative structure and characteristics of a red water-soluble pigment secreted by Penicillium marneffei. Medical mycology : official publication of the International Society for Human and Animal Mycology, 45 (5). pp. 419-27. ISSN 1369-3786
Bhasin, Manoj and Lata, Sneh and Raghava, G.P.S. (2007) Searching and mapping of T-cell epitopes, MHC binders, and TAP binders. Methods in molecular biology (Clifton, N.J.), 409. pp. 95-112. ISSN 1064-3745
Bhasin, Manoj and Lata, Sneh and Raghava, G.P.S. (2007) TAPPred prediction of TAP-binding peptides in antigens. Methods in molecular biology (Clifton, N.J.), 409. pp. 381-6. ISSN 1064-3745
Bhasin, Manoj and Raghava, G.P.S. (2007) A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes. Journal of biosciences, 32 (1). pp. 31-42. ISSN 0250-5991
Cameotra, Swaranjit Singh (2007) Preservation of microorganisms as deposits for patent application. Biochemical and biophysical research communications, 353 (4). pp. 849-50. ISSN 0006-291X
Chaudhuri, Saumya Ray and Mallam, Joshua N and Chévez-Barrios, Patricia and Wadhwa, Lalita and Ng, Philip and Hurwitz, Mary Y and Hurwitz, Richard L (2007) Modulation of adenoviral transduction in vitro and in vivo by hyaluronan and its receptor CD44. Molecular therapy : the journal of the American Society of Gene Therapy, 15 (3). pp. 566-70. ISSN 1525-0024
Dhiman, Rohan (2007) Study on TNF-alpha mediated death signaling by virulent and avirulent mycobacteria. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Dhiman, Rohan and Raje, Manoj and Majumdar, Sekhar (2007) Differential expression of NF-kappaB in mycobacteria infected THP-1 affects apoptosis. Biochimica et biophysica acta, 1770 (4). pp. 649-58. ISSN 0006-3002
Gambhir, Vandana (2007) Mycobacteria and Infected Macrophages : isolation and Characterization of Antigens. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Ganguli, Dwaipayan and Kumar, Chitranshu and Bachhawat, Anand K (2007) The alternative pathway of glutathione degradation is mediated by a novel protein complex involving three new genes in Saccharomyces cerevisiae. Genetics, 175 (3). pp. 1137-51. ISSN 0016-6731
Garg, Saurabh K and Alam, Md Suhail and Kishan, K V Radha and Agrawal, Pushpa (2007) Expression and characterization of alpha-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv. Protein expression and purification, 51 (2). pp. 198-208. ISSN 1046-5928
Garg, Saurabh K and Suhail Alam, Md and Soni, Vishal and Radha Kishan, K V and Agrawal, Pushpa (2007) Characterization of Mycobacterium tuberculosis WhiB1/Rv3219 as a protein disulfide reductase. Protein expression and purification, 52 (2). pp. 422-32. ISSN 1046-5928
Ghosh, A and Bhardwaj, M and Satyanarayana, T and Khurana, Meenu and Mayilraj, Shanmugam and Jain, R K (2007) Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil. International journal of systematic and evolutionary microbiology, 57 (Pt 2). pp. 238-42. ISSN 1466-5026
Ghosh, Anuradha (2007) Molecular and biochemical analysis of nitropheno Degrading pathways and study of bacterial diversity in contaminated soil. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Ghosh, Anuradha and Goyal, Abhineet and Jain, R K (2007) Study of methanol-induced phenotypic changes in a novel strain of Acinetobacter lwoffii. Archives of microbiology, 188 (5). pp. 533-9. ISSN 0302-8933
Goyal, Deepika and Sahoo, Debendra K and Sahni, Girish (2007) Hydrophobic interaction expanded bed adsorption chromatography (HI-EBAC) based facile purification of recombinant streptokinase from E. coli inclusion bodies. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences, 850 (1-2). pp. 384-91. ISSN 1570-0232
Greenbaum, Jason A and Andersen, Pernille Haste and Blythe, Martin and Bui, Huynh-Hoa and Cachau, Raul E and Crowe, James E and Davies, Matthew and Kolaskar, A S and Lund, Ole and Morrison, Sherrie and Mumey, Brendan and Ofran, Yanay and Pellequer, Jean-Luc and Pinilla, Clemencia and Ponomarenko, Julia V and Raghava, G.P.S. and van Regenmortel, Marc H V and Roggen, Erwin L and Sette, Alessandro and Schlessinger, Avner and Sollner, Johannes and Zand, Martin and Peters, Bjoern (2007) Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. Journal of molecular recognition : JMR, 20 (2). pp. 75-82. ISSN 0952-3499
Jain, Vibhu (2007) Studies on the Biofilm Formation by V. Cholerae non-01, non-0139 Strains. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Kapoor, Divya and Chandrayan, Sanjeev Kumar and Ahmed, Shubbir and Guptasarma, Purnananda (2007) Using DNA sequencing electrophoresis compression artifacts as reporters of stable mRNA structures affecting gene expression. Electrophoresis, 28 (21). pp. 3862-7. ISSN 0173-0835
Kaur, Harpreet and Garg, Aarti and Raghava, G.P.S. (2007) PEPstr: a de novo method for tertiary structure prediction of small bioactive peptides. Protein and peptide letters, 14 (7). pp. 626-31. ISSN 0929-8665
Kaur, Jagdeep and Rajamohan, Govindan and Dikshit, Kanak L (2007) Cloning and characterization of promoter-active DNA sequences from Streptococcus equisimilis. Current microbiology, 54 (1). pp. 48-53. ISSN 0343-8651
Kaur, Jasdeep and Singh, K Vikas and Boro, Robin C and Thampi, K R and Raje, Manoj and Varshney, Grish C and Suri, C Raman (2007) Immunochromatographic dipstick assay format using gold nanoparticles labeled protein-hapten conjugate for the detection of atrazine. Environmental science & technology, 41 (14). pp. 5028-36. ISSN 0013-936X
Kaur, Jaspreet and Bachhawat, Anand K (2007) Yct1p, a novel, high-affinity, cysteine-specific transporter from the yeast Saccharomyces cerevisiae. Genetics, 176 (2). pp. 877-90. ISSN 0016-6731
Kishan, K V Radha (2007) Structural biology, protein conformations and drug designing. Current protein & peptide science, 8 (4). pp. 376-80. ISSN 1389-2037
Kumar, Manish and Gromiha, M Michael and Raghava, G.P.S. (2007) Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC bioinformatics, 8. p. 463. ISSN 1471-2105
Kumar, Manish and Verma, Ruchi and Raghava, G.P.S. (2007) Mitpred2: an improved method for predicting mitochondrial proteins using SVM and HMM. Nature Protocols. ISSN 2043-0116
Kumar, Vijay (2007) Structure based activity studies of D-Hydantoinase from Bacillus sp. AR9. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Lama, Amrita (2007) Biochemical and Structure function Studies of Novel Hemoglobin From Pathogenic and Non-pathogenic Mycobacteria. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Lata, Sneh and Bhasin, Manoj and Raghava, G.P.S. (2007) Application of machine learning techniques in predicting MHC binders. Methods in molecular biology (Clifton, N.J.), 409. pp. 201-15. ISSN 1064-3745
Lata, Sneh and Sharma, B K and Raghava, G.P.S. (2007) Analysis and prediction of antibacterial peptides. BMC bioinformatics, 8. p. 263. ISSN 1471-2105
Lata, Sneh and Sharma, B K and Raghava, G.P.S. (2007) Analysis and prediction of antibacterial peptides. Nature Protocols. ISSN 2043-0116
Manickam, N and Misra, R and Mayilraj, Shanmugam (2007) A novel pathway for the biodegradation of gamma-hexachlorocyclohexane by a Xanthomonas sp. strain ICH12. Journal of applied microbiology, 102 (6). pp. 1468-78. ISSN 1364-5072
Mir, Manzoor A and Agrewala, J N (2007) Influence of CD80 and CD86 Co-Stimulation in the Modulation of the Activation of Antigen Presenting Cells. Current Immunology Reviews, 3 (3). pp. 160-169. ISSN 1875-631X
Mishra, Nitish K and Kumar, Manish and Raghava, G.P.S. (2007) Support vector machine based prediction of glutathione S-transferase proteins. Protein and peptide letters, 14 (6). pp. 575-580. ISSN 0929-8665
Moniaux, N and Chaturvedi, P and Varshney, Grish C and Meza, J L and Rodriguez-Sierra, J F and Aubert, J-P and Batra, S K (2007) Human MUC4 mucin induces ultra-structural changes and tumorigenicity in pancreatic cancer cells. British journal of cancer, 97 (3). pp. 345-57. ISSN 0007-0920
Muthukrishnan, S and Garg, Aarti and Raghava, G.P.S. (2007) Oxypred: prediction and classification of oxygen-binding proteins. Genomics, proteomics & bioinformatics / Beijing Genomics Institute, 5 (3-4). pp. 250-2. ISSN 1672-0229
Nakwal, Nandni (2007) Investigation into the mechanism of action of RNAi and Anaphase promoting complex in gene silencing in Schizosacchromyces pombe. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Osman, Shariff and Moissl, Christine and Hosoya, Naofumi and Briegel, Ariane and Mayilraj, Shanmugam and Satomi, Masataka and Venkateswaran, Kasthuri (2007) Tetrasphaera remsis sp. nov., isolated from the Regenerative Enclosed Life Support Module Simulator (REMS) air system. International journal of systematic and evolutionary microbiology, 57 (Pt 12). pp. 2749-53. ISSN 1466-5026
Pandey, Janmejay and Ganesan, K and Jain, R K (2007) Variations in T-RFLP profiles with differing chemistries of fluorescent dyes used for labeling the PCR primers. Journal of microbiological methods, 68 (3). pp. 633-8. ISSN 0167-7012
Pashov, Anastas and Monzavi-Karbassi, Behjatolah and Raghava, G.P.S. and Kieber-Emmons, Thomas (2007) Peptide mimotopes as prototypic templates of broad-spectrum surrogates of carbohydrate antigens for cancer vaccination. Critical reviews in immunology, 27 (3). pp. 247-70. ISSN 1040-8401
Patnaik, P R (2007) ANALYSIS OF THE EFFECT OF FLOW INTERRUPTIONS ON FED-BATCH FERMENTATION FOR PHB PRODUCTION BYRALSTONIA EUTROPHAIN FINITELY DISPERSED BIOREACTORS. Chemical Engineering Communications, 194 (5). pp. 603-617. ISSN 0098-6445
Patnaik, P R (2007) FRACTAL CHARACTERIZATION OF FERMENTATIONS WITH BUDDING YEAST UNDER DETERMINISTIC AND CHAOTIC CONDITIONS. Fractals, 15 (02). p. 163. ISSN 0218-348X
Patnaik, P R (2007) Fractal analysis of the attenuation of noise inflow to bioreactors under monotonic, oscillating and chaotic conditions. INTERNATIONAL JOURNAL OF CHEMICAL REACTOR ENGINEERING, 5. A23.
Patnaik, P R (2007) "Intelligent" descriptions of microbial kinetics in finitely dispersed bioreactors: neural and cybernetic models for PHB biosynthesis by Ralstonia eutropha. Microbial Cell Factories, 6 (1). p. 23. ISSN 14752859
Patnaik, P R (2007) Sensitivity Propagations in Response to Start-Up Perturbations During Batch Fermentations with Complementary Cultures. Chemical Engineering Research and Design, 85 (7). pp. 1079-1085. ISSN 02638762
Patnaik, P R (2007) A reappraisal of the plasmid stability problem in chemostat cultures. Indian Journal of Biotechnology, 6. pp. 267-270. ISSN 0975-0967 (Online); 0972-5849 (Print)
Patnaik, Pratap R (2007) Hybrid filtering of feed stream noise from oscillating yeast cultures by combined Kalman and neural network configurations. Bioprocess and biosystems engineering, 30 (3). pp. 181-8. ISSN 1615-7591
Patnaik, Pratap R (2007) Robustness analysis of the E. coli chemosensory system to perturbations in chemoattractant concentrations. Bioinformatics (Oxford, England), 23 (7). pp. 875-81. ISSN 1367-4811
Paul, Sanjoy (2007) Development of Genetic Tools to Identify Genes Crucial for Virulence in Candida albicans. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Pawaria, Sudesh and Rajamohan, Govindan and Gambhir, Vandana and Lama, Amrita and Varshney, Grish C and Dikshit, Kanak L (2007) Intracellular growth and survival of Salmonella enterica serovar Typhimurium carrying truncated hemoglobins of Mycobacterium tuberculosis. Microbial pathogenesis, 42 (4). pp. 119-28. ISSN 0882-4010
Pawaria, Sudesh and Rajamohan, Govindan and Gambhir, Vandana and Lama, Amrita and Varshney, Grish C and Dikshit, Kanak L (2007) Intracellular growth and survival of Salmonella enterica serovar Typhimurium carrying truncated hemoglobins of Mycobacterium tuberculosis. Microbial pathogenesis, 42 (4). pp. 119-28. ISSN 0882-4010
Raghava, G.P.S. (2007) Prediction of subcellular localization of proteins using machine learning techniques and evolutionary information. Amino acids, 33. x-xi. ISSN 1438-2199
Rampal, Poonam and Saini, H S and Raj, Mayil and Chimni, Swapandeep Singh and Chadha, Bhupinder Singh (2007) Enantiocomplementary reduction of 3-phenylthiopropan-2-one by Bacillus sp.: effect of medium components. Bioresource technology, 98 (3). pp. 725-8. ISSN 0960-8524
Rashid, Mamoon and Saha, Sudipto and Raghava, G.P.S. (2007) Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. BMC bioinformatics Vol.8; 2007, 8. p. 337. ISSN 1471-2105
Rishi, Loveena and Dhiman, Rohan and Raje, Manoj and Majumdar, Sekhar (2007) Nitric oxide induces apoptosis in cutaneous T cell lymphoma (HuT-78) by downregulating constitutive NF-kappaB. Biochimica et biophysica acta, 1770 (8). pp. 1230-1239. ISSN 0006-3002
Saha, Sudipto and Raghava, G.P.S. (2007) BTXpred: prediction of bacterial toxins. In silico biology, 7 (4-5). pp. 405-412. ISSN 1386-6338
Saha, Sudipto and Raghava, G.P.S. (2007) Predicting virulence factors of immunological interest. Methods in molecular biology (Clifton, N.J.), 409. pp. 407-15. ISSN 1064-3745
Saha, Sudipto and Raghava, G.P.S. (2007) Prediction methods for B-cell epitopes. Methods in molecular biology (Clifton, N.J.), 409. pp. 387-94. ISSN 1064-3745
Saha, Sudipto and Raghava, G.P.S. (2007) Prediction of allergenic proteins and mapping of IgE epitopes in allergens. Natute Pritocols. ISSN 2043-0116
Saha, Sudipto and Raghava, G.P.S. (2007) Prediction of neurotoxins based on their function and source. In silico biology, 7 (4-5). pp. 369-87. ISSN 1386-6338
Saha, Sudipto and Raghava, G.P.S. (2007) Searching and mapping of B-cell epitopes in Bcipep database. Methods in molecular biology (Clifton, N.J.), 409 (6). pp. 113-124. ISSN 1064-3745
Saluja, Puja and Prasad, G S (2007) Cryptococcus rajasthanensis sp. nov., an anamorphic yeast species related to Cryptococcus laurentii, isolated from Rajasthan, India. International journal of systematic and evolutionary microbiology, 57 (Pt 2). pp. 414-8. ISSN 1466-5026
Saluja, Puja and Prasad, G S (2007) Debaryomyces singareniensis sp. nov., a novel yeast species isolated from a coal mine soil in India. FEMS yeast research, 7 (3). pp. 482-8. ISSN 1567-1356
Sanger, Shefali (2007) Characterization of new biocatalysts for the asymmetric oxidation of organic sulfides. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Saxena, Neetu (2007) Engineering TIM barrel enzyme(s) towards defined, altered functions. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Sen, Pradip and Wallet, Mark A and Yi, Zuoan and Huang, Yingsu and Henderson, Michael and Mathews, Clayton E and Earp, H Shelton and Matsushima, Glenn and Baldwin, Albert S and Tisch, Roland M (2007) Apoptotic cells induce Mer tyrosine kinase-dependent blockade of NF-kappaB activation in dendritic cells. Blood, 109 (2). pp. 653-60. ISSN 0006-4971
Shahi, Puja and Sharma, Ritu and Sanger, Shefali and Kumar, Ish and Jolly, R S (2007) Formation of amyloid fibrils via longitudinal growth of oligomers. Biochemistry, 46 (25). pp. 7365-73. ISSN 0006-2960
Sharma, Amit (2007) Structural Studies of Proteolyzed Intermediates: Insights into Protein Fragments. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Sharma, Narinder K and Pandey, Janmejay and Gupta, Nisha and Jain, R K (2007) Growth and physiological response of Arthrobacter protophormiae RKJ100 toward higher concentrations of o-nitrobenzoate and p-hydroxybenzoate. FEMS microbiology letters, 271 (1). pp. 65-70. ISSN 0378-1097
Sharma, Ritu (2007) Biocatalytic methods for the synthesis of chiral compounds. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Sharma, S and Chopra, Kanwaljit and Kulkarni, S K and Agrewala, J N (2007) Resveratrol and curcumin suppress immune response through CD28/CTLA-4 and CD80 co-stimulatory pathway. Clinical and experimental immunology, 147 (1). pp. 155-63. ISSN 0009-9104
Shukla, Anshuman and Sharma, Swati and Guptasarma, Purnananda (2007) Confocal spectrofluorimetric evidence for the hetero-aggregation of sequence-scrambled forms of two model all-beta sheet proteins. International journal of biological macromolecules, 41 (5). pp. 650-4. ISSN 0141-8130
Singh, Harpreet and Raghava, G.P.S. (2007) Prediction and mapping of promiscuous MHC class II binders in an antigen sequence. Nature Protocols. ISSN 2043-0116
Singh, Pooja (2007) Bacterial Degradation of Hydrophobic Pollutants with Special Reference to Bioremediation of Petroleum Sludge. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Srivastava, Shilpy and Singh, Mahender Kumar and Raghava, G.P.S. and Varshney, Grish C (2007) Searching haptens, carrier proteins, and anti-hapten antibodies. Methods in molecular biology (Clifton, N.J.), 409. pp. 125-39. ISSN 1064-3745
Suresh, K and Mayilraj, Shanmugam and Bhattacharya, A and Chakrabarti, T (2007) Planococcus columbae sp. nov., isolated from pigeon faeces. International journal of systematic and evolutionary microbiology, 57 (Pt 6). pp. 1266-71. ISSN 1466-5026
Suresh, K and Prakash, Dhan and Rastogi, N and Jain, R K (2007) Clostridium nitrophenolicum sp. nov., a novel anaerobic p-nitrophenol-degrading bacterium, isolated from a subsurface soil sample. International journal of systematic and evolutionary microbiology, 57 (Pt 8). pp. 1886-90. ISSN 1466-5026
Thakur, Meghna (2007) Studies on the interaction of a mycobacterial eukaryotic-type serine/threonine kinase with its substrate(s) and the role of protein phosphatase in the process. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
Tiwary, Bhupendra N and Prasad, Birendra and Ghosh, Anuradha and Kumar, Sanjay and Jain, R K (2007) Characterization of two novel biovar of Agrobacterium tumefaciens isolated from root nodules of Vicia faba. Current microbiology, 55 (4). pp. 328-33. ISSN 0343-8651
Yadav, Suman (2007) Structure function studies of Streptokinase. PhD thesis, CSIR-IMTECH, Chandigarh/ Jawaharlal Nehru University, New Delhi: India.
