A total of 19 Methyl accepting chemotaxis proteins (MCPs) have been found after the genome annotation of strain SJ98. We also find out the MCPs in other compared starins i.e. Burkholderia sp. YI23, Burkholderia sp. 1001, Burkholderia sp. 1002 and Burkholderia sp. 1003.
We have used
TMHMM Server v. 2.0 to find out the transmembrane domains in the predicted MCPs of Burkholderia sp. SJ98.
Summary of TMHMM Server v. 2.0 results is given below.
| S.No. |
Protein |
Sequence |
Size(aa) |
TMHs |
Exp number of AAs in TMHs |
POSSIBLE N-term signal sequence
| Outside |
TMhelix |
Inside |
|
Figure |
| 1. |
SJ98_1 |
FASTA |
542 |
2 |
43.44496 |
| 1-27 and 231-542 |
28-50 and 208-230 |
51-207 |
|
Download |
| 2. |
SJ98_2 |
FASTA |
513 |
2 |
42.2 |
| 1-6 and 206-513 |
7-24 and 183-205 |
25-182 |
| Download |
| 3. |
SJ98_3 |
FASTA |
521 |
1 |
39.88 |
| Download |
| 4. |
SJ98_4 |
FASTA |
507 |
1 |
21.63 |
| Download |
| 5. |
SJ98_5 |
FASTA |
517 |
2 |
43.21 |
| 1-9 and 211-517 |
10-27 and 188-210 |
28-187 |
| Download |
| 6. |
SJ98_6 |
FASTA |
563 |
2 |
39.449 |
| 1-4 and 202-563 |
5-27 and 179-201 |
28-178 |
| Download |
| 7. |
SJ98_7 |
FASTA |
515 |
2 |
44.42 |
| 1-9 and 205-515 |
10-32 and 182-204 |
33-181 |
| Download |
| 8. |
SJ98_8 |
FASTA |
635 |
1 |
40.46 |
| Download |
| 9. |
SJ98_9 |
FASTA |
506 |
2 |
38.5 |
| 1-3 and 192-506 |
4-26 and 169-191 |
27-168 |
| Download |
| 10. |
SJ98_10 |
FASTA |
574 |
2 |
56.43 |
| 1-14 and 212-574 |
15-37 and 189-211 |
38-188 |
| Download |
| 11. |
SJ98_11 |
FASTA |
648 |
2 |
42.48 |
| 1-14 and 335-648 |
15-34 and 312-334 |
|
| Download |
| 12. |
SJ98_12 |
FASTA |
571 |
2 |
54.87 |
| 1-9 and 206-571 |
10-32 and 183-205 |
33-182 |
| Download |
| 13. |
SJ98_13 |
FASTA |
606 |
2 |
44.43 |
| 1-9 and 210-606 |
10-32 and 187-209 |
33-186 |
| Download |
| 14. |
SJ98_14 |
FASTA |
525 |
2 |
44.26 |
| 1-12 and 210-525 |
13-35 and 187-209 |
36-186 |
| Download |
| 15. |
SJ98_15 |
FASTA |
541 |
2 |
43.88 |
| 1-9 and 210-541 |
10-32 and 190-209 |
33-189 |
| Download |
| 16. |
SJ98_16 |
FASTA |
564 |
1 |
48.80 |
| Download |
| 17. |
SJ98_17 |
FASTA |
516 |
2 |
43.396 |
| 1-9 and 209-516 |
10-32 and 186-208 |
|
| Download |
| 18. |
SJ98_18 |
FASTA |
513 |
2 |
44.74 |
| 1-9 and 207-513 |
10-32 and 184-206 |
33-183 |
| Download |
| 19. |
SJ98_19 |
FASTA |
519 |
2 |
42.63 |
| 191-194 |
168-190 and 195-214 |
1-167 and 215-519 |
| Download |