We have also annotate the genome of Burkholderia sp. SJ98 by KASS server . All CDSs (i.e. amino acid sequences) sequences have been submitted to KASS server. All KO I.Ds assigned at KASS were further mapped to KEGG database to map the genes in pathways.
00010 Glycolysis / Gluconeogenesis (31)
00020 Citrate cycle (TCA cycle) (24)
00030 Pentose phosphate pathway (27)
00040 Pentose and glucuronate interconversions (13)
00051 Fructose and mannose metabolism (16)
00052 Galactose metabolism (8)
00053 Ascorbate and aldarate metabolism (10)
00500 Starch and sucrose metabolism (23)
00520 Amino sugar and nucleotide sugar metabolism (28)
00620 Pyruvate metabolism (35)
00630 Glyoxylate and dicarboxylate metabolism (40)
00640 Propanoate metabolism (29)
00650 Butanoate metabolism (31)
00660 C5-Branched dibasic acid metabolism (6)
00562 Inositol phosphate metabolism (12)
00190 Oxidative phosphorylation (46)
00195 Photosynthesis (8)
00710 Carbon fixation in photosynthetic organisms (15)
00720 Carbon fixation pathways in prokaryotes (31)
00680 Methane metabolism (36)
00910 Nitrogen metabolism (46)
00920 Sulfur metabolism (9)
00061 Fatty acid biosynthesis (12)
00062 Fatty acid elongation (2)
00071 Fatty acid metabolism (17)
00072 Synthesis and degradation of ketone bodies (6)
00120 Primary bile acid biosynthesis (3)
00121 Secondary bile acid biosynthesis (1)
00140 Steroid hormone biosynthesis (2)
00561 Glycerolipid metabolism (12)
00564 Glycerophospholipid metabolism (20)
00565 Ether lipid metabolism (2)
00600 Sphingolipid metabolism (2)
00590 Arachidonic acid metabolism (2)
00591 Linoleic acid metabolism (1)
00592 alpha-Linolenic acid metabolism (2)
01040 Biosynthesis of unsaturated fatty acids (4)
00230 Purine metabolism (70)
00240 Pyrimidine metabolism (42)
00250 Alanine, aspartate and glutamate metabolism (25)
00260 Glycine, serine and threonine metabolism (39)
00270 Cysteine and methionine metabolism (21)
00280 Valine, leucine and isoleucine degradation (22)
00290 Valine, leucine and isoleucine biosynthesis (11)
00300 Lysine biosynthesis (13)
00310 Lysine degradation (10)
00330 Arginine and proline metabolism (44)
00340 Histidine metabolism (19)
00350 Tyrosine metabolism (17)
00360 Phenylalanine metabolism (28)
00380 Tryptophan metabolism (15)
00400 Phenylalanine, tyrosine and tryptophan biosynthesis (21)
00410 beta-Alanine metabolism (15)
00430 Taurine and hypotaurine metabolism (5)
00440 Phosphonate and phosphinate metabolism (5)
00450 Selenocompound metabolism (10)
00460 Cyanoamino acid metabolism (8)
00471 D-Glutamine and D-glutamate metabolism (4)
00472 D-Arginine and D-ornithine metabolism (1)
00473 D-Alanine metabolism (4)
00480 Glutathione metabolism (12)
00510 N-Glycan biosynthesis (1)
00514 Other types of O-glycan biosynthesis (2)
00531 Glycosaminoglycan degradation (1)
00603 Glycosphingolipid biosynthesis - globo series (1)
00604 Glycosphingolipid biosynthesis - ganglio series (1)
00540 Lipopolysaccharide biosynthesis (18)
00550 Peptidoglycan biosynthesis (18)
00511 Other glycan degradation (2)
00730 Thiamine metabolism (9)
00740 Riboflavin metabolism (8)
00750 Vitamin B6 metabolism (6)
00760 Nicotinate and nicotinamide metabolism (16)
00770 Pantothenate and CoA biosynthesis (18)
00780 Biotin metabolism (5)
00785 Lipoic acid metabolism (2)
00790 Folate biosynthesis (13)
00670 One carbon pool by folate (12)
00830 Retinol metabolism (4)
00860 Porphyrin and chlorophyll metabolism (35)
00130 Ubiquinone and other terpenoid-quinone biosynthesis (14)
00900 Terpenoid backbone biosynthesis (14)
00909 Sesquiterpenoid and triterpenoid biosynthesis (2)
00906 Carotenoid biosynthesis (1)
00908 Zeatin biosynthesis (1)
00903 Limonene and pinene degradation (5)
00281 Geraniol degradation (6)
01051 Biosynthesis of ansamycins (1)
00253 Tetracycline biosynthesis (4)
00523 Polyketide sugar unit biosynthesis (4)
01054 Nonribosomal peptide structures (1)
01055 Biosynthesis of vancomycin group antibiotics (1)
00940 Phenylpropanoid biosynthesis (2)
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis (1)
00901 Indole alkaloid biosynthesis (1)
00950 Isoquinoline alkaloid biosynthesis (1)
00960 Tropane, piperidine and pyridine alkaloid biosynthesis (3)
00965 Betalain biosynthesis (1)
00311 Penicillin and cephalosporin biosynthesis (2)
00312 beta-Lactam resistance (2)
00521 Streptomycin biosynthesis (8)
00524 Butirosin and neomycin biosynthesis (1)
00401 Novobiocin biosynthesis (3)
00362 Benzoate degradation (25)
00627 Aminobenzoate degradation (14)
00364 Fluorobenzoate degradation (8)
00625 Chloroalkane and chloroalkene degradation (13)
00361 Chlorocyclohexane and chlorobenzene degradation (8)
00623 Toluene degradation (9)
00622 Xylene degradation (9)
00633 Nitrotoluene degradation (3)
00642 Ethylbenzene degradation (2)
00643 Styrene degradation (9)
00791 Atrazine degradation (6)
00930 Caprolactam degradation (4)
00363 Bisphenol degradation (4)
00621 Dioxin degradation (7)
00626 Naphthalene degradation (9)
00624 Polycyclic aromatic hydrocarbon degradation (6)
00984 Steroid degradation (2)
00980 Metabolism of xenobiotics by cytochrome P450 (5)
00982 Drug metabolism - cytochrome P450 (5)
00983 Drug metabolism - other enzymes (7)
03020 RNA polymerase (4)
03010 Ribosome (53)
00970 Aminoacyl-tRNA biosynthesis (26)
03013 RNA transport (1)
03008 Ribosome biogenesis in eukaryotes (2)
03060 Protein export (13)
04141 Protein processing in endoplasmic reticulum (3)
04122 Sulfur relay system (9)
03018 RNA degradation (13)
03030 DNA replication (15)
03410 Base excision repair (12)
03420 Nucleotide excision repair (8)
03430 Mismatch repair (16)
03440 Homologous recombination (22)
03450 Non-homologous end-joining (2)
02010 ABC transporters (124)
02060 Phosphotransferase system (PTS) (5)
03070 Bacterial secretion system (29)
02020 Two-component system (99)
04011 MAPK signaling pathway - yeast (1)
04070 Phosphatidylinositol signaling system (3)
04151 PI3K-Akt signaling pathway (2)
04144 Endocytosis (1)
04142 Lysosome (4)
04146 Peroxisome (12)
02030 Bacterial chemotaxis (18)
02040 Flagellar assembly (33)
04112 Cell cycle - Caulobacter (13)
04113 Meiosis - yeast (1)
04210 Apoptosis (2)
04115 p53 signaling pathway (1)
04530 Tight junction (1)
04621 NOD-like receptor signaling pathway (1)
04622 RIG-I-like receptor signaling pathway (1)
04612 Antigen processing and presentation (1)
04666 Fc gamma R-mediated phagocytosis (1)
04910 Insulin signaling pathway (3)
04920 Adipocytokine signaling pathway (2)
03320 PPAR signaling pathway (6)
04912 GnRH signaling pathway (1)
04914 Progesterone-mediated oocyte maturation (1)
04260 Cardiac muscle contraction (3)
04978 Mineral absorption (1)
04964 Proximal tubule bicarbonate reclamation (2)
04724 Glutamatergic synapse (2)
04727 GABAergic synapse (1)
04722 Neurotrophin signaling pathway (1)
04626 Plant-pathogen interaction (5)
05200 Pathways in cancer (3)
05204 Chemical carcinogenesis (3)
05203 Viral carcinogenesis (1)
05210 Colorectal cancer (1)
05211 Renal cell carcinoma (1)
05215 Prostate cancer (1)
05222 Small cell lung cancer (1)
05340 Primary immunodeficiency (2)
05010 Alzheimer's disease (5)
05012 Parkinson's disease (4)
05014 Amyotrophic lateral sclerosis (ALS) (2)
05016 Huntington's disease (5)
05032 Morphine addiction (1)
05416 Viral myocarditis (1)
04940 Type I diabetes mellitus (1)
04930 Type II diabetes mellitus (1)
05111 Vibrio cholerae pathogenic cycle (3)
05120 Epithelial cell signaling in Helicobacter pylori infection (2)
05132 Salmonella infection (4)
05133 Pertussis (5)
05134 Legionellosis (5)
05150 Staphylococcus aureus infection (2)
05152 Tuberculosis (4)
05164 Influenza A (1)
05168 Herpes simplex infection (1)
05145 Toxoplasmosis (1)