HIVsirDB: A database of HIV inhibiting siRNAs

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HIVsir ID	HIV Strain	NCBI Accession	Target Gene	Position of siRNA target	Sense Sequence of siRNA	Efficacy (%)	GC Content (%)	Cell line	PubMed
1564	HIV-1 (LAI)	K02013	Gag	N/A	GUGAAGGGGCAGUAGUAAU	86.00	38	293 T	18180777
1403	HIV-1 (LAI)	K02013	Gag	330	AGAGAGAUGGGUGCGAGAG	86.00	46	293 T	19384894
1650	HIV-1 (NL4-3)	AF324493	Gag/pol	4114	CCAGCACACAAAGGAAUU	86.00	35	293 FT cells	20949027
1136	HIV-1 (LAI)	K02013	Pol	1911	CAGGAGCAGAUGAUACAGU	86.00	38	293 T	16959541
1492	HIV-1 (NL4-3)	AF324493	Vpu	144	AGCAGAAGACAGUGGCAAUGA	86.00	38	HEK 293a	19497094
1373	93JP-NH1	AB052995	Env	7658	UUGGAGAAGUGAAUUAUAUAA	86.80	19	Hela	17996047
1353	93JP-NH1	AB052995	Pol	2485	GACCUACACCUGUCAACAUAA	86.80	35	Hela	17996047
1101	HIV-1 (LAI)	K02013	Nef	8279	GUGCCUGGCUAGAAGCACA	87.00	46	C33A	16697708
1094	HIV-1 (R3b)	K02013	vif	N/A	GGAAAGCUAAGGACUGGUU	87.00	38	CEMx174	15851006
1640	HIV-1 (NL4-3)	AF324493	Gag/pol	2822	ACAGCUGGACUGUCAAUGAC	87.00	40	293 FT cells	20949027
1253	HIV-1 (NL4-3)	AF324493	Pol	3006	UGGAAAGGAUCACCAGCAAUA	87.00	35	Hela	17996047
1642	HIV-1 (NL4-3)	AF324493	Gag/pol	2893	GGCAAGUCAGAUUUAUGCAG	87.00	36	293 FT cells	20949027
1269	HIV-1 (NL4-3)	AF324493	Pol	4961	AGGUGAAGGGGCAGUAGUAAU	87.00	38	Hela	17996047
1001	HIV-1 (NL4-3)	AF324493	Tat/Rev	8499	GCCUGUGCCUCUUCAGCUACC	87.00	50	293T/EcR	11981565
1407	HIV-1 (LAI)	K02013	Gag	334	AGAUGGGUGCGAGAGCGUC	87.00	50	293 T	19384894
1552	HIV-1 (NL4-3)	AF324493	LTR	350	GGGACUUUCCGCUGGGGACUU	87.00	50	Molt-4	19233310
1561	HIV-1 (LAI)	K02013	Pol	N/A	AUGGCAGGAAGAAGCGGAG	87.00	46	293 T	18180777
1656	HIV-1 (NL4-3)	AF324493	Rev	5545	GAGCUCAUCAGAACAGUCAG	87.00	40	293 FT cells	20949027
1401	HIV-1 (LAI)	K02013	Gag	328	GGAGAGAGAUGGGUGCGAG	87.00	50	293 T	19384894
1440	HIV-1 (NL4-3)	AF324493	Gag	698	GAAGUGACAUAGCAGGAACU	87.90	36	HEK 293a	19497094
1585	HIV-1 (IIIB)	EU541617	Gag	K*2062	GAUUGUACUGAGAGACAGG	88.00	38	Hela	15831707
1609	HIV-1 (NL4-3)	AF324493	vif	K*5195	GUUCAGAAGUACACAUCCCAC	88.00	38	293 T	18596982
1117	HIV-1 (LAI)	K02013	Nef	9081	GGGACUGGAAGGGCUAAUU	88.00	42	293 T	16948865
1577	HIV-1(BAL)	K02013	Gag	K*2062	GAUUGUACUGAGAGACAGG	88.00	38	Hela	15831707
1559	HIV-1 (NL4-3)	AF324493	Env	6687	AAGAAUCCGUAUCCAGAGA	88.00	33	293 T	17173982