Field | Sense | Antisense |
siRNA chemical modification | 2-Deoxythymidine | D-Isonucleoside uracil* 2-Deoxythymidine |
siRNA modification types | 1 | 2 |
Overall number of modifications | 2 | 3 |
Position of modifications | 20,21 | 5* 20,21 |
Modification on sugar or base or phosphate | Sugar | Nucleoside |
SMILES (Click to view structure & nomenclature) |
CC1=CN(C2CC(O)C(CO)O2)C(=O)NC1=O |
OCC1OCC(C1OP(O)([O-])=O)N1C=CC(=O)NC1=O CC1=CN(C2CC(O)C(CO)O2)C(=O)NC1=O |
siRNA Sequence | GCAACUCAUGGUUCAUGCUTT | AGCAUGAACCAUGAGUUGCTT |
siRNA length base-pair | 21 | 21 |
siRNA name in paper | siMek1-A05D | siMek1-A05D |
Biological activity | 27 percent target mRNA inhibition | |
Experiment used to check activity | Dual luciferase reporter assay | |
Melting temperature (oC) | 58.7 | |
Target gene | MEK1 gene | |
siRNA concentration | 10 nM | |
Cell or Organism used | HEK293 cells | |
Transfection method | Lipofectamine 2000 | |
Duration after transfection | 24 Hours | |
Article title | Effects of conformational alteration induced by D-/L-isonucleoside incorporation in siRNA on their stability in serum and silencing activity |
|
Reference | 23682837 |