S. No.

Resource

Year

Description

Working URL

1

VIRsiRNAdb

2012

Database of experimentally validated
viral siRNAs

http://crdd.osdd.net/servers/virsirnadb/

2

HIVsirDB

2011

A Database of HIV Inhibiting siRNAs.

http://crdd.osdd.net/raghava/hivsir/

3

siRecords

2006

Database of mammalian siRNAs with
efficacy ratings

http://sirecords.biolead.org/‎

4

siVirus

2006

A web-based antiviral siRNA design
software for highly divergent viral sequences

http://sivirus.rnai.jp/

5

siRNAdb

2005

Database on experimentally verified and
computationally generated siRNA's
against mammalian genes

http://sirna.sbc.su.se/

6

HuSiDa

2005

The human siRNA database

http://itb.biologie.hu-berlin.de/
~nebulus/sirna/index.htm

7

E-RNAi

2005

A web application to design optimized
RNAi constructs.

http://www.dkfz.de/signaling/e-rnai3/

8

DEQOR

2004

A web-based tool for the design and
quality control of siRNAs

http://deqor.mpi-cbg.de/deqor_new/input.html

9

siDirect

2004

A software system for computing highly
effective small interfering RNA
(siRNA) sequences

http://sidirect2.rnai.jp/

10

Modomics

2013 

A collection of naturally occurring modified
RNA nucleosides. For each modification the
name, short name and one letter abbreviation
are provided.

http://modomics.genesilico.pl/

11

RNAMDB

1996

The RNA modification database provides a
comprehensive listing of post transcriptionally
modified nucleosides from RNA

http://mods.rna.albany.edu/

12

3D Ribosomal Modification Maps Db

2007

A database of maps showing the sites of modified
rRNA nucleotides in three-dimensional models

http://people.biochem.umass.edu
/fournierlab/3dmodmap/main.php