A database of experimentally validated
chemically modified siRNAs
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Modification in sense
Position in sense strand
Modification in antisense
Position in antisense
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Note: (i) 0 indicates modification in opposite strand. (ii) Multiple modifications are separated bt asterisk (*).
By modification in sense strand
By modification position in sense strand
By modification in antisense strand
0
1,3-Benzenedimethanol
1-Aminohexane
2,3-Di-Chlorobenzene
2,4-bridged nucleic acid* DeoxyThymidine
2,4-Carbocyclic-Ethylene-bridged nucleic acid-Locked nucleic acid
2,4-Carbocyclic-Locked nucleic acid-Locked nucleic acid
2,4-Difluorobenzene
2,4-Difluorotoluene
2,4-Locked nucleic acid
2-Aminoethoxymethyl
2-Aminoethoxymethyl* 2-Deoxy
2-Aminoethyl
2-Aminopropoxymethyl* 2-Deoxy
2-Aminopropyl
2-Deoxy
2-Deoxy* 2-Fluoro* 2-Methoxy
2-Deoxy* 2-Methoxy
2-Deoxy-2-Fluoro
2-Deoxy-2-Fluoro* 2-O-Methyl
2-Deoxy-2-Fluoro-4-Thioarabinonucleic acid
2-Deoxy-2-Fluoroarabinonucleic acid
2-Deoxy-2-fluorouridine
2-Deoxy-2-N,4-C-Ethylene-Locked nucleic acid
2-Deoxyribonucleotide
2-Deoxyribonucleotide* [3-(hydroxymethyl)-5-naphthalen-1-ylphenyl]methanol* [3-(hydroxymethyl)phenyl]methanol
2-Deoxyribonucleotide* Inverted abasic
2-Deoxyribonucleotide* Inverted thymidine
2-Deoxythymidine
2-Deoxythymidine (Mutation)
2-Deoxythymidine * 3-Amino
2-Deoxythymidine* 5-Amino * 3-Amino
2-Deoxythymidine* Biotin
2-Deoxythymidine* Puromycin
2-Fluoro
2-Fluoro* 2-Deoxy
2-Fluoro* 2-Deoxy* 2-Methoxy
2-Fluoro* 2-Hydroxy* 2-Methoxy
2-Fluoro* 2-Methoxy
2-Fluoro* 2-Methoxy* 2-Hydroxy
2-Fluoro* 2-O-Methyl
2-Fluoro* Cholesterol
2-Fluoro* Inverted DeoxyThymidine
2-Fluoro* Phosphorothioate
2-Fluororibose* 3-O-methylribose* Phosphorothioate
2-Fluororibose* Phosphorothioate
2-Fluororibose* Xylo-3-fluororibose* Phosphorothioate
2-Fluororibose* Xylo-O-methylribose* Phosphorothioate
2-Hydroxy* 2-Fluoro* 2-Methoxy
2-Hydroxy* 2-Methoxy
2-Methoxy* 2-Deoxy
2-Methoxy* 2-Fluoro
2-Methoxy* 2-Fluoro* 2-Hydroxy
2-Methoxy* 2-Hydroxy
2-Methoxyribose* DeoxyThymidine
2-N-Adamant-1-yl-Methylcarbonyl-2-Amino-Locked nucleic acid* Locked nucleic acid
2-N-Pyren-1-yl Methyl-2-Amino-Locked nucleic acid* Locked nucleic acid
2-O-Aminoethyl-ribose
2-O-Benzyl
2-O-Guanidinopropyl
2-O-Lysylaminohexyl
2-O-methoxyethylribose
2-O-methoxyethylribose* Phosphorothioate
2-O-Methyl
2-O-Methyl ribose
2-O-Methyl* 2-Aminoethyl
2-O-Methyl* 2-Cyanoethyl
2-O-Methyl* 2-Fluoro
2-O-Methyl* 2-Fluoro* 5-Phosphate
2-O-Methyl* 2-Fluoro* Cholesterol
2-O-Methyl* 2-O-Benzyl
2-O-Methyl* Cholesterol
2-O-Methyl* Cy3
2-O-Methyl* Phosphate
2-O-Methyl* Phosphodiester
2-O-Methyl* Phosphorothioate
2-O-Methyl-4-Thioribose* 2-Deoxy
2-O-Methylribose
2-Thiouridine
3-Amino
4-C- Aminomethyl-2-O-Methylribose
4-C-Hydroxymethyl Deoxyribonucleic acid
4-C-Hydroxymethyl Deoxyribonucleic acid* Locked nucleic acid
4-Methylbenzimidazole
4-Thioribose
4-Thioribose* 2-O-Methyl
4-Thioribose* Phosphorothioate
5-Amino
5-Amino* 2-Deoxythymidine
5-Bromo-Uridine
5-Fluoro-2-Deoxyuridine
5-Fluoro-2-Deoxyuridine* Deoxyadenine
5-Fluoro-2-Deoxyuridine* Mismatch
5-hydroxy ribose* 2-Deoxy
5-hydroxy ribose* 2-Methoxy
5-Iodo-Uridine
5-phosphate ribose* 2-Deoxy
5-phosphate ribose* 2-Deoxy* 2-Fluoro* 2-Methoxy
5-phosphate ribose* 2-Deoxy* 2-Methoxy
5-phosphate ribose* 2-Fluoro* 2-Deoxy* 2-Methoxy
5-phosphate ribose* 2-Fluoro* 2-Hydroxy* 2-Methoxy
5-phosphate ribose* 2-Fluoro* 2-Methoxy
5-phosphate ribose* 2-Fluoro* 2-Methoxy* 2-Hydroxy
5-phosphate ribose* 2-Hydroxy* 2-Fluoro* 2-Methoxy
5-phosphate ribose* 2-Hydroxy* 2-Fluoro* 2-Methyl
5-phosphate ribose* 2-Hydroxy* 2-Methoxy
5-phosphate ribose* 2-Hydroxy* 2-Methoxy* 2-Fluoro
5-phosphate ribose* 2-Methoxy
5-phosphate ribose* 2-Methoxy* 2-Fluoro
5-phosphate ribose* 2-Methoxy* 2-Fluoro* 2-Hydroxy
5-phosphate ribose* 2-Methoxy* 2-Hydroxy
5-phosphate ribose* Inverted abasic* 2-Deoxy* 2-Fluoro* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Deoxy* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Fluoro* 2-Deoxy* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Fluoro* 2-Hydroxy* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Fluoro* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Fluoro* 2-Methoxy* 2-Hydroxy
5-phosphate ribose* Inverted abasic* 2-Hydroxy* 2-Fluoro* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Hydroxy* 2-Methoxy
5-phosphate ribose* Inverted abasic* 2-Methoxy* 2-Fluoro
5-phosphate ribose* Inverted abasic* 2-Methoxy* 2-Fluoro* 2-Hydroxy
5-phosphate ribose* Inverted abasic* 2-Methoxy* 2-Hydroxy
5-Thio
Alfa-L-Locked nucleic acid
Altritol nucleic acid
Aminoisonucleotide-Adenine* 2-Deoxythymidine
Aminoisonucleotide-thymidine* Aminoisonucleotide-adenine* 2-Deoxythymidine
Anthracene
Assymetric siRNA (3-End Overhang)
Boranophosphate
Boron cluster
Cyclohexenyl nucleic acid* 2-Deoxythymidine
D-Isonucleoside adenosine* 2-Deoxythymidine
D-Isonucleoside uracil* 2-Deoxythymidine
Deoxyadenine
Deoxyadenine* Mismatch
DeoxyThymidine
Deoxyuridine
Diaminopurine
Difluorotoluyl nucleotide
Dihydrouridine
Dimethoxy-Nitrophenyl Ethyl group
Fluorobenzene
Galactose
Glucosamine analogue
Hexitol nucleic acid
Hexitol nucleic acid* 2-Deoxy
Hypoxanthine
Hypoxanthine* 2-O-Benzyl
L-Isonucleoside adenosine* 2-Deoxythymidine
L-isonucleoside thymidine* 2-Deoxythymidine
L-Isonucleoside uracil* 2-Deoxythymidine
Locked nucleic acid
Locked nucleic acid* 2-O-Methylribose
Locked nucleic acid* Methylcytosine
Locked nucleic acid* Phosphodiester
Locked nucleic acid* Phosphodiester* 2-O-Methyl
Locked nucleic acid* Phosphorothioate
Locked nucleic acid* Thymidine
Methyl
Methylcytosine
Methylcytosine* Propynyluridine
Methyleneamide
Methyluridine
Morpholinouridine
Mutation* 5-O-Methyl
N-3 Methyluridine
N4-Ethyl-N4 2-Deoxy-5-Methylcytidine
N6-Ethyl-N6 2-Deoxyadenosine
Naphthalene modification
O-Methyl
Palmitic Acid
Peptide nucleic acids
Phosphate
Phosphate* Serinol nucleic acid
Phosphodiester
Phosphorothioate
Phosphorothioate* 2-Deoxy-2-fluororibose
Phosphorothioate* 2-O-(2-methoxyethyl)ribose
Phosphorothioate* 2-O-Fluoro
Phosphorothioate* 2-O-methoxyethylribose
Phosphorothioate* 2-O-Methyl
Phosphorothioate* 2-O-Methylribose
Phosphorothioate* Deoxy* 2-Fluoro* 2-O-Methyl
Phosphorothioate* Dimethoxy-Nitrophenyl Ethyl group
Phosphorothioate* Locked nucleic acid
Phosphorothioate* Phosphodiester
Phosphorothioate* Phosphodiester* 2-O-Methyl
Propynyluridine
Pseudouridine
Pyrene modification
Serinol nucleic acid
Thymidine
Thymidine analogue
Triazole-linked nucleic acid
Tricyclodeoxyribonucleic acid
Trifluoromethylbenzene
Unlocked nucleic acid
Unlocked nucleic acid * Locked nucleic acid
Unlocked nucleic acid* Locked nucleic acid
By modification position in antisense strand
Reference