Field | Sense | Antisense |
siRNA chemical modification | Inverted abasic* 2-Deoxy* 2-Methoxy | 2-Fluoro* 2-Methoxy |
siRNA modification types | 3 | 2 |
Overall number of modifications | 23 | 21 |
Position of modifications | 1,21 * 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19 * 20,21 | 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19 * 20,21 |
Modification on sugar or base or phosphate | Base; Sugar; Sugar | Sugar |
SMILES (Click to view structure & nomenclature) |
CC1COC(CO)C1OP(O)([O-])=O OCC1OCCC1O COC1C(O)OC(CO)C1O |
OCC1OCC(F)C1O COC1C(O)OC(CO)C1O |
siRNA Sequence | CCAGUAAGGCUUCUCUUAAUU | UUAAGAGAAGCCUUACUGGUU |
siRNA length base-pair | 21 | 21 |
siRNA name in paper | APOB8786 | APOB8786-112 |
Biological activity | 96.02 percent target mRNA inhibition | |
Experiment used to check activity | Real-time PCR | |
Melting temperature (oC) | NA | |
Target gene | ApoB gene | |
siRNA concentration | 100 nM | |
Cell or Organism used | Hepa1-6 cells | |
Transfection method | Lipofectamine RNAiMAX | |
Duration after transfection | 24 Hours | |
Article title | mRNA knockdown by single strand RNA is improved by chemical modifications |
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Reference | 22253019 |